introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 15696601

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
84731723 GT-AG 0 1.000000099473604e-05 89 rna-gnl|WGS:JAHUZN|Goano.001G092300-1 15696601 1 12918832 12918920 Gossypium anomalum 47600 AGG|GTAAGAATGT...TGTTTCTTTTCT/TCTTTTCTAATG...AATAG|GCT 0 1 66.194
84731724 GT-AG 0 1.7171288564153223e-05 94 rna-gnl|WGS:JAHUZN|Goano.001G092300-1 15696601 2 12918600 12918693 Gossypium anomalum 47600 CAG|GTAAGTTCCT...TGCTTTTTAAAT/ATTGTTCTCACT...ACCAG|ATA 0 1 69.156
84731725 GT-AG 0 1.000000099473604e-05 269 rna-gnl|WGS:JAHUZN|Goano.001G092300-1 15696601 3 12918151 12918419 Gossypium anomalum 47600 AAG|GTAGTAATTT...CTTTTTTTATTG/CCTTTTTTTATT...TACAG|TCT 0 1 73.02
84731726 GT-AG 0 0.0001676871166818 537 rna-gnl|WGS:JAHUZN|Goano.001G092300-1 15696601 4 12917419 12917955 Gossypium anomalum 47600 AAG|GTACTTCTAA...CTACTCTTGAAT/AAAATATTGATA...TGCAG|AAC 0 1 77.205
84731727 GT-AG 0 1.000000099473604e-05 77 rna-gnl|WGS:JAHUZN|Goano.001G092300-1 15696601 5 12917243 12917319 Gossypium anomalum 47600 CAG|GTGAGCTTAT...ATTTCTTCAATG/ATTTGTCTAAAA...TTCAG|GTG 0 1 79.33
84731728 GT-AG 0 1.000000099473604e-05 114 rna-gnl|WGS:JAHUZN|Goano.001G092300-1 15696601 6 12916529 12916642 Gossypium anomalum 47600 AAG|GTAAATTCCT...TACATTTTGCTT/TATGGATTCAGT...TGCAG|GAA 0 1 92.209

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);