WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 15696586

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
84731523	GT-AG	0.0001685973797213	439	rna-gnl\|WGS:JAHUZN\|Goano.001G047000-1 15696586	4	4944266	4944704	Gossypium anomalum 47600	AAG\|GTATGATATC...TTTGTTTTATTA/TTTTGTTTTATT...TCTAG\|TTT	1	1	25.116
84731524	GT-AG	0.0170442441766987	57	rna-gnl\|WGS:JAHUZN\|Goano.001G047000-1 15696586	5	4944180	4944236	Gossypium anomalum 47600	ATT\|GTATTATAAT...TTACTTTTATTT/TTTACTTTTATT...TTAAG\|CGA	0	1	25.652
84731525	GT-AG	0.0001497904423989	5916	rna-gnl\|WGS:JAHUZN\|Goano.001G047000-1 15696586	6	4938244	4944159	Gossypium anomalum 47600	AAG\|GTATGATCCT...CCTCTTTTATTT/ATATTATTTAAT...GTTAG\|GTA	2	1	26.023
84731526	GT-AG	0.0017605222527609	990	rna-gnl\|WGS:JAHUZN\|Goano.001G047000-1 15696586	7	4935432	4936421	Gossypium anomalum 47600	AAG\|GTACATTCTT...GTGTTTTTAATG/GTGTTTTTAATG...TCAAG\|GAA	0	1	59.745
84731527	GT-AG	0.0247474418342441	327	rna-gnl\|WGS:JAHUZN\|Goano.001G047000-1 15696586	8	4934217	4934543	Gossypium anomalum 47600	AAG\|GTACACTTTT...GTTTTATTAATT/TTTGTTTTCATT...ACCAG\|GAA	0	1	76.18
84731528	GT-AG	0.0002298048835627	266	rna-gnl\|WGS:JAHUZN\|Goano.001G047000-1 15696586	9	4933384	4933649	Gossypium anomalum 47600	AAG\|GTACGTTCCC...TTCCCTTTACTT/CTTCCCTTTACT...TGCAG\|GAG	0	1	86.674
84731529	GT-AG	0.0038318460188869	128	rna-gnl\|WGS:JAHUZN\|Goano.001G047000-1 15696586	10	4932650	4932777	Gossypium anomalum 47600	CAG\|GTATTTATCC...TTCATTTTATTT/TTTATTTTTATG...TGAAG\|GCA	0	1	97.89

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);