WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 1565135

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
8696558	GT-AG	0.0001947997832061	72	rna-XM_020233892.1 1565135	2	1659158	1659229	Ananas comosus 4615	GAG\|GTACTCACTC...TCCACTTTCATA/CCTTAATTAATT...TACAG\|GAA	0	1	72.236
8696559	GT-AG	0.0290378822750158	388	rna-XM_020233892.1 1565135	3	1659314	1659701	Ananas comosus 4615	CAG\|GTATGCTTAT...AATTTTTCAACT/GAATTTTTCAAC...TGCAG\|ATT	0	1	74.76
8696560	GT-AG	2.024516972037685e-05	95	rna-XM_020233892.1 1565135	4	1659855	1659949	Ananas comosus 4615	CTG\|GTAAGTTTAT...TTTTTCTTCCCT/TTTTTTTTCAAT...TTCAG\|ATC	0	1	79.357
8696561	GT-AG	1.632272097462277e-05	83	rna-XM_020233892.1 1565135	5	1660114	1660196	Ananas comosus 4615	CAA\|GTAAAGTTCT...TCGCACTTAAAT/ACTTAAATCACC...CGCAG\|GTA	2	1	84.285
8696562	GT-AG	1.000000099473604e-05	115	rna-XM_020233892.1 1565135	6	1660345	1660459	Ananas comosus 4615	AAG\|GTTAAGTTAC...AGTGCGATAAAT/AAGGAAATAAGC...TTCAG\|GTT	0	1	88.732
8696563	GT-AG	1.000000099473604e-05	200	rna-XM_020233892.1 1565135	7	1660583	1660782	Ananas comosus 4615	AAG\|GTAATACATA...TGTTCTTTGATT/TGTTCTTTGATT...TACAG\|GTT	0	1	92.428
8696564	GT-AG	0.0004851440720329	217	rna-XM_020233892.1 1565135	8	1660871	1661087	Ananas comosus 4615	TAG\|GTATGCCGAT...GACGACTTATCA/AAAGAACTCACT...AGCAG\|GGG	1	1	95.072
8703418	GT-AG	1.736034789767916e-05	754	rna-XM_020233892.1 1565135	1	1656097	1656850	Ananas comosus 4615	AAG\|GTACATCACT...TTGCTTTTACAG/ATTGAAGTGATC...CTTAG\|GTG		0	4.898

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);