WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 1565102

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
8696161	GT-AG	1.000000099473604e-05	3104	rna-XM_020228320.1 1565102	1	10836036	10839139	Ananas comosus 4615	AAG\|GTCAGTTTAT...TTACCTTTATTG/TTTACCTTTATT...TGCAG\|TAC	0	1	23.431
8696162	GT-AG	0.0304385072085714	1368	rna-XM_020228320.1 1565102	2	10839379	10840746	Ananas comosus 4615	CAA\|GTATGTTTGG...ATTTTCTCAATT/TATTTTCTCAAT...CTCAG\|GAC	2	1	29.246
8696163	GT-AG	1.000000099473604e-05	94	rna-XM_020228320.1 1565102	3	10840874	10840967	Ananas comosus 4615	CTG\|GTAAGTGGCT...TACTTTTTGATT/TTGTTGTTTACT...ACCAG\|GAA	0	1	32.336
8696164	GT-AG	1.000000099473604e-05	95	rna-XM_020228320.1 1565102	4	10841037	10841131	Ananas comosus 4615	CAG\|GTTATTCTAT...AATCCCTTATTT/CTTATTTTTAGT...TTCAG\|GAG	0	1	34.015
8696165	GT-AG	0.0001527991160424	413	rna-XM_020228320.1 1565102	5	10841282	10841694	Ananas comosus 4615	TTA\|GTACGACATC...CAGTTCTTATTC/CCAGTTCTTATT...CCCAG\|CCA	0	1	37.664
8696166	GT-AG	1.183899674124773e-05	533	rna-XM_020228320.1 1565102	6	10841797	10842329	Ananas comosus 4615	GAA\|GTAAGTCTCA...TAATCATTCACA/TAATCATTCACA...AACAG\|ATT	0	1	40.146
8696167	GT-AG	0.0028069397401718	1118	rna-XM_020228320.1 1565102	7	10842647	10843764	Ananas comosus 4615	GAG\|GTATGTTATG...TTGCCATTAATT/TTGCCATTAATT...TTCAG\|GTT	2	1	47.859
8696168	GT-AG	9.237796252859124e-05	1149	rna-XM_020228320.1 1565102	8	10845317	10846465	Ananas comosus 4615	AAG\|GTATGACTTG...CACTACTTAACT/TTGTTCCTCACT...ATCAG\|GGC	0	1	85.62

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);