WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 1565100

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
8696144	GT-AG	0.0001677470481205	96	rna-XM_020233409.1 1565100	1	13240711	13240806	Ananas comosus 4615	CGC\|GTAAATCCCT...TGGTTTTTATTT/GTGGTTTTTATT...TGTAG\|AGC	2	1	3.645
8696145	GT-AG	1.000000099473604e-05	769	rna-XM_020233409.1 1565100	2	13239829	13240597	Ananas comosus 4615	AAT\|GTGATTGTTC...GTTTACTTACTG/TGTTTACTTACT...TTCAG\|GTT	1	1	6.355
8696146	GT-AG	0.0350906342890071	451	rna-XM_020233409.1 1565100	3	13239170	13239620	Ananas comosus 4615	AGG\|GTATGCTGTC...TATATCTGAACG/ATAGTTTTCATG...GATAG\|ACC	2	1	11.343
8696147	GT-AG	1.000000099473604e-05	82	rna-XM_020233409.1 1565100	4	13238532	13238613	Ananas comosus 4615	CAG\|GTAAAAGCTT...TGTACTTTATAT/ATGTACTTTATA...GATAG\|GTC	0	1	24.676
8696148	GT-AG	0.0034804030645645	128	rna-XM_020233409.1 1565100	5	13238152	13238279	Ananas comosus 4615	TGG\|GTATAGTATT...CTCTCTTTATAT/ATTAGCTTCATT...GTCAG\|TTA	0	1	30.719
8696149	GT-AG	0.0001109688401775	75	rna-XM_020233409.1 1565100	6	13237894	13237968	Ananas comosus 4615	AAG\|GTACCAAAAT...TTGCTATTATCT/GTATTTTTCATG...TATAG\|ACA	0	1	35.108
8696150	GT-AG	0.2287446314460894	84	rna-XM_020233409.1 1565100	7	13237735	13237818	Ananas comosus 4615	CTA\|GTATGTTGAC...TTTTCCTTGAAT/TTTTCCTTGAAT...GCTAG\|ATA	0	1	36.906
8696151	GT-AG	0.0035706371104079	1128	rna-XM_020233409.1 1565100	8	13234279	13235406	Ananas comosus 4615	ACA\|GTATGTCTCT...TGTTTCCAAATA/TAATATGTAATT...TGCAG\|ATG	0	1	92.734

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);