WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 15550523

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
84004457	GT-AG	5.4049700740940965e-05	298	rna-XM_028391420.1 15550523	1	55298880	55299177	Glycine soja 3848	CAG\|GTCACTTTCA...TTGGTTTGGAAT/CATTTGGTGATG...TTCAG\|GTG	0	1	2.383
84004458	GT-AG	0.0008517702619252	81	rna-XM_028391420.1 15550523	2	55299379	55299459	Glycine soja 3848	ACG\|GTATGATTTT...TTCTTTTTGTCA/TGTGATCTAATT...TGCAG\|GGG	0	1	8.524
84004459	GT-AG	1.000000099473604e-05	169	rna-XM_028391420.1 15550523	3	55299583	55299751	Glycine soja 3848	CAT\|GTTAGTATTT...TGGTGCTTAACA/GTAAATTTTATT...AACAG\|GTA	0	1	12.282
84004460	GT-AG	1.000000099473604e-05	106	rna-XM_028391420.1 15550523	4	55299790	55299895	Glycine soja 3848	AAG\|GTACAAAGGG...CAGTTTTTGATG/CAGTTTTTGATG...TGCAG\|AGA	2	1	13.443
84004461	GT-AG	0.000222864048901	297	rna-XM_028391420.1 15550523	5	55300005	55300301	Glycine soja 3848	GAA\|GTATGAATTT...ATTTCTTTTTTT/ACATGATTCATC...TGCAG\|GAT	0	1	16.774
84004462	GT-AG	1.000000099473604e-05	190	rna-XM_028391420.1 15550523	6	55302579	55302768	Glycine soja 3848	GAG\|GTAAGGTTTC...AGCATGTTAATA/CTTGTGGTAATT...GGCAG\|GGA	0	1	86.343
84004463	GT-AG	0.000216769847067	275	rna-XM_028391420.1 15550523	7	55302907	55303181	Glycine soja 3848	AAG\|GTATAATCAT...AATTACTTATCT/AAATTACTTATC...AACAG\|GTG	0	1	90.559
84004464	GT-AG	1.000000099473604e-05	181	rna-XM_028391420.1 15550523	8	55303259	55303439	Glycine soja 3848	GAG\|GTCTGAATAC...CAGTTATTAATT/CAGTTATTAATT...GGCAG\|TAA	2	1	92.912

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);