WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 15550471

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
84003850	GT-AG	1.388791925600132e-05	1096	rna-XM_028381656.1 15550471	1	44636592	44637687	Glycine soja 3848	CGA\|GTCAGTTTCT...CTGTATTTAACT/CTGTATTTAACT...GTTAG\|GTT	2	1	3.048
84003851	GT-AG	1.000000099473604e-05	164	rna-XM_028381656.1 15550471	2	44636264	44636427	Glycine soja 3848	GAG\|GTTAGATTTC...TGTCCCTTTGCT/CCTTTGCTAATT...TGCAG\|GGA	1	1	6.273
84003852	GT-AG	9.453025042470698e-05	87	rna-XM_028381656.1 15550471	3	44636053	44636139	Glycine soja 3848	TAA\|GTATGAGCTG...GGATTTTTGAAA/GGATTTTTGAAA...TAAAG\|GTT	2	1	8.712
84003853	GT-AG	1.3017966634027929e-05	124	rna-XM_028381656.1 15550471	4	44635799	44635922	Glycine soja 3848	AAG\|GTACAAATTT...GAATACTTAATT/TAATTTTTCATT...TCCAG\|CTG	0	1	11.268
84003854	GT-AG	0.0008485156923566	97	rna-XM_028381656.1 15550471	5	44635640	44635736	Glycine soja 3848	AAA\|GTAAGCTCCA...TGGTTTTTGATG/CTCAATTTAATT...TGTAG\|ATT	2	1	12.488
84003855	GT-AG	1.000000099473604e-05	88	rna-XM_028381656.1 15550471	6	44631345	44631432	Glycine soja 3848	AAG\|GTGAGGCAGT...TGCCTTTTAACC/TGCCTTTTAACC...TGCAG\|CTT	0	1	95.221
84003856	GT-AG	1.000000099473604e-05	84	rna-XM_028381656.1 15550471	7	44631174	44631257	Glycine soja 3848	AAG\|GTTAGTGCTT...ATTATTTTATTT/CATTATTTTATT...CTCAG\|TCC	0	1	96.932
84003857	GT-AG	1.556731517339744e-05	117	rna-XM_028381656.1 15550471	8	44630952	44631068	Glycine soja 3848	CAG\|GTCTGTCTCA...AATATGTTAATT/AATATGTTAATT...AATAG\|GCT	0	1	98.997

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);