WtMTA: introns: 10 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

10 rows where transcript_id = 15495819

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
83763020	GT-AG	1.000000099473604e-05	754	rna-XM_003516220.5 15495819	1	28099730	28100483	Glycine max 3847	CAG\|GTACTAGATC...TGGTTTATAACC/TTGTGGTTTATA...TGCAG\|GAT	0	1	11.593
83763021	GT-AG	1.000000099473604e-05	1244	rna-XM_003516220.5 15495819	2	28101815	28103058	Glycine max 3847	AAG\|GTCAGTTTTT...ACTAATTTATTT/TATACACTAACT...TTCAG\|GAT	2	1	48.596
83763022	GT-AG	1.000000099473604e-05	78	rna-XM_003516220.5 15495819	3	28103170	28103247	Glycine max 3847	CAG\|GTTTGTGATA...GAGTTCTTACAA/TTGCATTTAACC...TGCAG\|TGT	2	1	51.682
83763023	GT-AG	1.000000099473604e-05	82	rna-XM_003516220.5 15495819	4	28103525	28103606	Glycine max 3847	GGG\|GTGAGTTAGG...TCACCTGTAACT/ATGCGCCTCATT...TCTAG\|GTT	0	1	59.383
83763024	GT-AG	8.002079565169395e-05	87	rna-XM_003516220.5 15495819	5	28103696	28103782	Glycine max 3847	TGG\|GTATAATACA...GATGTCTGACAT/AGATGTCTGACA...TGCAG\|GTT	2	1	61.857
83763025	GT-AG	1.000000099473604e-05	467	rna-XM_003516220.5 15495819	6	28103892	28104358	Glycine max 3847	AAG\|GTAAAATAAA...ATATTTTTATGC/TTTATGCTGATT...ATTAG\|GCT	0	1	64.887
83763026	GT-AG	0.0112269052250353	128	rna-XM_003516220.5 15495819	7	28104572	28104699	Glycine max 3847	CTG\|GTATGTTTCG...AATGTTTTATTT/GTTTTATTTATT...TAAAG\|GTC	0	1	70.809
83763027	GT-AG	0.0011595557891141	111	rna-XM_003516220.5 15495819	8	28104826	28104936	Glycine max 3847	CAG\|GTACTCAGCA...TTTTTTTTAATT/TTTTTTTTTATT...GGCAG\|GCG	0	1	74.312
83763028	GT-AG	0.0001258251972843	510	rna-XM_003516220.5 15495819	9	28105036	28105545	Glycine max 3847	ATG\|GTATTGCCAC...TTTATATTAACT/TTTATATTAACT...GACAG\|ATA	0	1	77.064
83763029	GT-AG	0.0001066131580556	415	rna-XM_003516220.5 15495819	10	28105738	28106152	Glycine max 3847	AGG\|GTAAGCTTAC...ACTTCTCTGATG/TTGCATTTCACA...GGCAG\|TTT	0	1	82.402

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);