introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 15495807

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
83762844 GT-AG 0 0.0044762970183335 211 rna-XM_026129151.2 15495807 1 57378292 57378502 Glycine max 3847 CAG|GTATGTATGC...GTTTTCTTGATT/GTTTTCTTGATT...TGCAG|ATG 0 1 57.339
83762845 GT-AG 0 1.0384776199570545 122 rna-XM_026129151.2 15495807 2 57378040 57378161 Glycine max 3847 AAT|GTATTCACTC...ATTACTTTGACT/TTTCTTTTTATT...CATAG|ATC 1 1 60.652
83762846 GT-AG 0 0.0663322897919334 361 rna-XM_026129151.2 15495807 3 57377590 57377950 Glycine max 3847 GAG|GTACCTCTTC...TAAGCCTAGATT/ATTATTATTATT...TACAG|CTT 0 1 62.92
83762847 GT-AG 0 1.000000099473604e-05 837 rna-XM_026129151.2 15495807 4 57376514 57377350 Glycine max 3847 TGG|GTAAGTAGTT...CTTTCTTTTTCT/TTTCTATTCATT...TTCAG|ATC 2 1 69.011
83762848 GT-AG 0 1.000000099473604e-05 851 rna-XM_026129151.2 15495807 5 57375576 57376426 Glycine max 3847 CAG|GTACTAAAGC...AAGTATTTACTT/TAAGTATTTACT...CTTAG|GTT 2 1 71.228
83762849 GT-AG 0 0.0029703432319973 140 rna-XM_026129151.2 15495807 6 57375336 57375475 Glycine max 3847 TTG|GTAAACCTTG...TCCTCCTTGATT/TCTAATCTTATT...GGAAG|GCC 0 1 73.777
83762850 GT-AG 0 1.000000099473604e-05 241 rna-XM_026129151.2 15495807 7 57374902 57375142 Glycine max 3847 AAG|GTAATAAAAC...TAAGTTTTACTT/ATAAGTTTTACT...GACAG|GTT 1 1 78.695

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);