WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 15374522

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
83326722	GT-AG	0.0001990236158261	71	rna-gnl\|WGS:QKYT\|C1645_mRNA811053 15374522	1	231265	231335	Glomus cerebriforme 658196	AAC\|GTAAGTTTTC...AGATCTTCAACA/ATTTCATTTATT...TCCAG\|AGT	0	1	7.635
83326723	GT-AG	0.0027838926083582	66	rna-gnl\|WGS:QKYT\|C1645_mRNA811053 15374522	2	231077	231142	Glomus cerebriforme 658196	AAG\|GTATGCCCTT...TTCTACTTATTT/GTTCTACTTATT...CACAG\|TAT	2	1	17.652
83326724	GT-AG	4.748284638562699e-05	74	rna-gnl\|WGS:QKYT\|C1645_mRNA811053 15374522	3	230909	230982	Glomus cerebriforme 658196	AAT\|GTAAGTTACA...GTTTGTTTAACA/TTGTGTTTGATA...ATTAG\|GAA	0	1	25.369
83326725	GT-AG	1.000000099473604e-05	83	rna-gnl\|WGS:QKYT\|C1645_mRNA811053 15374522	4	230637	230719	Glomus cerebriforme 658196	CAG\|GTTTGAATTG...TTTGGTTTATTT/ATTTGGTTTATT...TATAG\|ATT	0	1	40.887
83326726	GT-AG	0.0023955614782841	75	rna-gnl\|WGS:QKYT\|C1645_mRNA811053 15374522	5	230519	230593	Glomus cerebriforme 658196	CAG\|GTACTTTTTA...TTCTATTTAATT/GTTATTCTAATT...CTTAG\|CCA	1	1	44.417
83326727	GT-AG	0.0003836463129842	71	rna-gnl\|WGS:QKYT\|C1645_mRNA811053 15374522	6	230376	230446	Glomus cerebriforme 658196	CAG\|GTTTATATTT...ATTTTCTTATTC/AATTTTCTTATT...CACAG\|GAT	1	1	50.328
83326728	GT-AG	0.0011375152383788	66	rna-gnl\|WGS:QKYT\|C1645_mRNA811053 15374522	7	230231	230296	Glomus cerebriforme 658196	AAG\|GTATATCAAA...ATATTCTTATTT/AATATTCTTATT...TTTAG\|CTT	2	1	56.814

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);