WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 15374513

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
83326696	GT-AG	0.0011067300385557	70	rna-gnl\|WGS:QKYT\|C1645_mRNA869753 15374513	1	140577	140646	Glomus cerebriforme 658196	TAT\|GTATGTACAA...ATTTACTTATAA/TATTTACTTATA...ATAAG\|GAA	0	1	5.523
83326697	GT-AG	6.005693433382722e-05	72	rna-gnl\|WGS:QKYT\|C1645_mRNA869753 15374513	2	140746	140817	Glomus cerebriforme 658196	GAG\|GTATGGTAAT...TGATTTTTAAAC/TTTAAATTGATT...GATAG\|TAT	0	1	12.032
83326698	GT-AG	0.0007001358250769	83	rna-gnl\|WGS:QKYT\|C1645_mRNA869753 15374513	3	140935	141017	Glomus cerebriforme 658196	GAT\|GTACGGTATT...TAAACTTTAATT/ATAATATTTATA...TTTAG\|AGA	0	1	19.724
83326699	GT-AG	1.000000099473604e-05	83	rna-gnl\|WGS:QKYT\|C1645_mRNA869753 15374513	4	141178	141260	Glomus cerebriforme 658196	ATG\|GTAAAAAATA...GGATTTTTAAAG/TATTTATTTATT...TTAAG\|AAC	1	1	30.243
83326700	GT-AG	0.0006894428497971	85	rna-gnl\|WGS:QKYT\|C1645_mRNA869753 15374513	5	141466	141550	Glomus cerebriforme 658196	CAT\|GTATGATGCA...GAAGTTTTATTT/GTTTTATTTATT...TATAG\|AAG	2	1	43.721
83326701	GT-AG	2.1929095230159045e-05	69	rna-gnl\|WGS:QKYT\|C1645_mRNA869753 15374513	6	141669	141737	Glomus cerebriforme 658196	CCA\|GTAAGTAATT...ATTATTTTAAAT/ATTATTTTAAAT...AACAG\|GTT	0	1	51.479
83326702	GT-AG	1.000000099473604e-05	69	rna-gnl\|WGS:QKYT\|C1645_mRNA869753 15374513	7	142036	142104	Glomus cerebriforme 658196	TAC\|GTAAGTAAAA...CTTATTTTACCT/TATATTTTCACT...TATAG\|TTA	1	1	71.072

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);