WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 15374512

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
83326689	GT-AG	1.000000099473604e-05	105	rna-gnl\|WGS:QKYT\|C1645_mRNA684630 15374512	1	558355	558459	Glomus cerebriforme 658196	AAG\|GTAGAGGGAA...TTTTTTTTATTA/TTTTTTTTTATT...TAAAG\|TAT	0	1	9.339
83326690	GT-AG	1.000000099473604e-05	80	rna-gnl\|WGS:QKYT\|C1645_mRNA684630 15374512	2	558136	558215	Glomus cerebriforme 658196	TTG\|GTAAGATATT...TATTCCTTGAAA/ATTAAACTTATC...CATAG\|TAC	1	1	18.353
83326691	GT-AG	0.0055946709177022	76	rna-gnl\|WGS:QKYT\|C1645_mRNA684630 15374512	3	557903	557978	Glomus cerebriforme 658196	TAT\|GTTTGCATTT...TTCAATTTGATA/GCAATTCTAATT...TCAAG\|CGA	2	1	28.534
83326692	GT-AG	1.000000099473604e-05	72	rna-gnl\|WGS:QKYT\|C1645_mRNA684630 15374512	4	557595	557666	Glomus cerebriforme 658196	TAG\|GTAATGTACC...TGTTTTATAACT/TGTTTTATAACT...AATAG\|GGT	1	1	43.839
83326693	GT-AG	0.0249766965550696	107	rna-gnl\|WGS:QKYT\|C1645_mRNA684630 15374512	5	557381	557487	Glomus cerebriforme 658196	GGT\|GTATGTATAA...TTTATTTTAAAT/TTATTATTTATT...TTTAG\|GTT	0	1	50.778
83326694	GT-AG	0.12141194565962	91	rna-gnl\|WGS:QKYT\|C1645_mRNA684630 15374512	6	557063	557153	Glomus cerebriforme 658196	GGT\|GTATGTATAA...TTTTTTTTAATA/TTTTTTTTAATA...TAAAG\|AGA	2	1	65.499
83326695	GT-AG	1.000000099473604e-05	112	rna-gnl\|WGS:QKYT\|C1645_mRNA684630 15374512	7	556793	556904	Glomus cerebriforme 658196	ATG\|GTGAGTGCGA...ACATACATATAT/TATGTATATATT...ATTAG\|CAA	1	1	75.746

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);