WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 15374497

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
83326604	GT-AG	0.0089790527100395	85	rna-gnl\|WGS:QKYT\|C1645_mRNA746568 15374497	3	442787	442871	Glomus cerebriforme 658196	TTG\|GTAAACCTTT...TTATCCTTAATT/TATGTTTTTATT...AAAAG\|GGA	0	1	9.607
83326605	GT-AG	0.0188502732662494	72	rna-gnl\|WGS:QKYT\|C1645_mRNA746568 15374497	4	443085	443156	Glomus cerebriforme 658196	TTA\|GTACGTTTCT...ATTTCGTTGATT/ATAATACTAATT...TATAG\|AAA	0	1	17.358
83326606	GT-AG	0.0002065208689617	76	rna-gnl\|WGS:QKYT\|C1645_mRNA746568 15374497	5	444009	444084	Glomus cerebriforme 658196	ATG\|GTAAACTAAA...TTAATTTTACTT/GTTAATTTTACT...TTAAG\|ATC	0	1	48.362
83326607	GT-AG	1.000000099473604e-05	77	rna-gnl\|WGS:QKYT\|C1645_mRNA746568 15374497	6	444500	444576	Glomus cerebriforme 658196	CAG\|GTTTAAAATT...TTTTTTTTATTA/ATTTTTTTTATT...GTTAG\|AAT	1	1	63.464
83326608	GT-AG	0.011561251352018	88	rna-gnl\|WGS:QKYT\|C1645_mRNA746568 15374497	7	444765	444852	Glomus cerebriforme 658196	GAT\|GTATGTAATA...ATTATTTTGATG/ATTTTATTTATA...TTCAG\|CTT	0	1	70.306
83326609	GT-AG	5.321198664358994e-05	83	rna-gnl\|WGS:QKYT\|C1645_mRNA746568 15374497	8	445314	445396	Glomus cerebriforme 658196	CAA\|GTAATATTTA...TTATTTTTATAT/TTTATTTTTATA...TTTAG\|TGT	2	1	87.082
83326902	GT-AG	4.749450836809177e-05	119	rna-gnl\|WGS:QKYT\|C1645_mRNA746568 15374497	1	442309	442427	Glomus cerebriforme 658196	AGG\|GTAGGCAATA...ATTTCTTTCACA/ATTTCTTTCACA...TATAG\|AGC		0	1.201
83326903	GT-AG	1.000000099473604e-05	88	rna-gnl\|WGS:QKYT\|C1645_mRNA746568 15374497	2	442506	442593	Glomus cerebriforme 658196	AAG\|GTAATAAATA...AAAATTTTATCA/TACTTTTTTATA...TTTAG\|ATT		0	4.039

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);