WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 15374496

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
83326596	GT-AG	0.000533488946276	77	rna-gnl\|WGS:QKYT\|C1645_mRNA672460 15374496	1	145982	146058	Glomus cerebriforme 658196	GGT\|GTAAGTATTC...TTCCTTTTAATA/GTTTCTCTTATA...TTTAG\|CCC	0	1	3.68
83326597	GT-AG	1.000000099473604e-05	95	rna-gnl\|WGS:QKYT\|C1645_mRNA672460 15374496	2	146244	146338	Glomus cerebriforme 658196	AAG\|GTAAAAATTA...ATATTTTTAATC/ATATTTTTAATC...AATAG\|GAT	2	1	8.613
83326598	GT-AG	0.0020640209250631	89	rna-gnl\|WGS:QKYT\|C1645_mRNA672460 15374496	3	146499	146587	Glomus cerebriforme 658196	TCT\|GTAAGTATTT...TAATTTTTAATT/TTTTCTTTCACT...AAAAG\|TAT	0	1	12.88
83326599	GT-AG	1.000000099473604e-05	81	rna-gnl\|WGS:QKYT\|C1645_mRNA672460 15374496	4	146993	147073	Glomus cerebriforme 658196	GTT\|GTGAGTATTA...TTTATTTTAACT/TTTATTTTAACT...TATAG\|GTG	0	1	23.68
83326600	GT-AG	0.0005786234523869	86	rna-gnl\|WGS:QKYT\|C1645_mRNA672460 15374496	5	147384	147469	Glomus cerebriforme 658196	AAA\|GTAATTTACA...AATTCTTTAATT/AATTCTTTAATT...TTTAG\|GTA	1	1	31.947
83326601	GT-AG	2.730528147538955e-05	76	rna-gnl\|WGS:QKYT\|C1645_mRNA672460 15374496	6	148463	148538	Glomus cerebriforme 658196	TTC\|GTAAGTCATC...TTTTTTTTCATT/TTTTTTTTCATT...TTTAG\|TTA	1	1	58.427
83326602	GT-AG	0.0030619021378743	115	rna-gnl\|WGS:QKYT\|C1645_mRNA672460 15374496	7	149150	149264	Glomus cerebriforme 658196	TTG\|GTATGTACAA...TAATTCTTAATT/GAATTATTCATT...TTTAG\|TTT	0	1	74.72
83326603	GT-AG	0.0013003363064594	82	rna-gnl\|WGS:QKYT\|C1645_mRNA672460 15374496	8	149317	149398	Glomus cerebriforme 658196	CTG\|GTAAATTTTC...TTAACTTTAACA/AAATTTTTTAAT...TTCAG\|TCC	1	1	76.107

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);