WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 15374495

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
83326588	GT-AG	0.0014381942277731	89	rna-gnl\|WGS:QKYT\|C1645_mRNA746620 15374495	1	616198	616286	Glomus cerebriforme 658196	ATG\|GTAATTTTTC...AACCTCTTAACA/TTTCTTTTTATA...AATAG\|AGA	0	1	10.551
83326589	GT-AG	1.000000099473604e-05	80	rna-gnl\|WGS:QKYT\|C1645_mRNA746620 15374495	2	616483	616562	Glomus cerebriforme 658196	AAG\|GTAAAATATG...TTTCCTTTTGCA/CATATGCTGAAT...TTTAG\|GAT	1	1	15.696
83326590	GT-AG	3.491080533283304e-05	109	rna-gnl\|WGS:QKYT\|C1645_mRNA746620 15374495	3	616665	616773	Glomus cerebriforme 658196	AAG\|GTAAATTTCA...TTATTATTATTA/ATTATTATTATT...TTTAG\|ATG	1	1	18.373
83326591	GT-AG	0.0001346845122968	71	rna-gnl\|WGS:QKYT\|C1645_mRNA746620 15374495	4	617672	617742	Glomus cerebriforme 658196	AAG\|GTAGATTTGA...ACTTTATTAACT/ACTTTATTAACT...AATAG\|AAT	2	1	41.942
83326592	GT-AG	4.89430599115325e-05	89	rna-gnl\|WGS:QKYT\|C1645_mRNA746620 15374495	5	618656	618744	Glomus cerebriforme 658196	TTG\|GTAAGCGATG...ATATTTTTAATT/ATATTTTTAATT...ATTAG\|ACA	0	1	65.906
83326593	GT-AG	5.449358186609439e-05	71	rna-gnl\|WGS:QKYT\|C1645_mRNA746620 15374495	6	619117	619187	Glomus cerebriforme 658196	CAA\|GTAAAGTTTT...AATTTGTTAATT/AATTTGTTAATT...AATAG\|CCA	0	1	75.669
83326594	GT-AG	1.000000099473604e-05	84	rna-gnl\|WGS:QKYT\|C1645_mRNA746620 15374495	7	619250	619333	Glomus cerebriforme 658196	AAG\|GTTGGTTAGA...CTTTTCTTATTT/ACTTTTCTTATT...AATAG\|TAC	2	1	77.297
83326595	GT-AG	0.0002902264051368	85	rna-gnl\|WGS:QKYT\|C1645_mRNA746620 15374495	8	619902	619986	Glomus cerebriforme 658196	CAA\|GTAAGTTATT...ATTTTCTTAAAA/AATTTTCTTAAA...AATAG\|CGT	0	1	92.205

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);