WtMTA: introns: 6 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 15319347

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
82923894	GT-AG	1.000000099473604e-05	6814	rna-gnl\|WGS:VWPO\|GLAPRA_R00030_mrna 15319347	1	1157204	1164017	Glareola pratincola 43316	GAG\|GTGAGAGACA...CAGTTCTTGTTA/CACATTTTCAGT...TTTAG\|TGA	1	1	44.004
82923895	GT-AG	1.000000099473604e-05	1486	rna-gnl\|WGS:VWPO\|GLAPRA_R00030_mrna 15319347	2	1164087	1165572	Glareola pratincola 43316	AAG\|GTAAAGACAC...CTATGCTTGGCT/GCAACACTGACC...TTCAG\|ATC	1	1	51.595
82923896	GT-AG	1.000000099473604e-05	4081	rna-gnl\|WGS:VWPO\|GLAPRA_R00030_mrna 15319347	3	1165681	1169761	Glareola pratincola 43316	CAG\|GTGAGTGAAG...TTTCTCTTTTTT/GTTGGTGTGAAG...AACAG\|TGA	1	1	63.476
82923897	GT-AG	1.000000099473604e-05	4994	rna-gnl\|WGS:VWPO\|GLAPRA_R00030_mrna 15319347	4	1169796	1174789	Glareola pratincola 43316	CAG\|GTAGGAGATT...GTTGCCTTCACT/CTTTTCCTCATA...TGCAG\|CTC	2	1	67.217
82923898	GT-AG	3.883256962937762e-05	833	rna-gnl\|WGS:VWPO\|GLAPRA_R00030_mrna 15319347	5	1174903	1175735	Glareola pratincola 43316	AAG\|GTATGAAAAC...GATCCCTTAATA/TTAATATTTATT...CATAG\|CTC	1	1	79.648
82923899	GT-AG	1.000000099473604e-05	11340	rna-gnl\|WGS:VWPO\|GLAPRA_R00030_mrna 15319347	6	1175798	1187137	Glareola pratincola 43316	CTG\|GTAAGTAACT...ACATTATTAACT/ACATTATTAACT...TCTAG\|CCA	0	1	86.469

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);