introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 15236038

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
82574750 GT-AG 0 7.37679892552973e-05 3449 rna-XM_041501479.1 15236038 1 36301282 36304730 Gigantopelta aegis 1735272 TTG|GTACATATAA...ACATTTTTTTTT/ATATTGCAAAAC...TACAG|ATG 1 1 22.521
82574751 GT-AG 0 1.000000099473604e-05 1509 rna-XM_041501479.1 15236038 2 36305073 36306581 Gigantopelta aegis 1735272 AAG|GTACAGCACG...CTGTGTTTGTCT/TATGTTGTCATG...TTCAG|GAT 1 1 30.389
82574752 GT-AG 0 2.2627904574388795e-05 7581 rna-XM_041501479.1 15236038 3 36306719 36314299 Gigantopelta aegis 1735272 CAG|GTGTGTATTC...TCATTTTTAATA/TCATTTTTAATA...GACAG|GGG 0 1 33.54
82574753 GT-AG 0 0.0364109865432506 1029 rna-XM_041501479.1 15236038 4 36314427 36315455 Gigantopelta aegis 1735272 CAG|GTATACACAC...CAATCCTTAATT/CAATCCTTAATT...GTTAG|TTG 1 1 36.462
82574754 GT-AG 0 3.092500880272308e-05 9360 rna-XM_041501479.1 15236038 5 36315725 36325084 Gigantopelta aegis 1735272 GAG|GTAAATATTT...GTTTCCTTCATT/GTTTCCTTCATT...TTCAG|AAT 0 1 42.65
82574755 GT-AG 0 1.000000099473604e-05 4053 rna-XM_041501479.1 15236038 6 36325158 36329210 Gigantopelta aegis 1735272 ATG|GTAAGAACTT...ATTCTATTAGTC/ATTAGTCTAACC...TTCAG|TTG 1 1 44.329

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);