WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 15198784

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
82239147	GT-AG	1.000000099473604e-05	2588	rna-XM_005415583.3 15198784	1	28463712	28466299	Geospiza fortis 48883	GAG\|GTAAATAGAT...ACATACTTATTT/GACATACTTATT...CCCAG\|TTT	0	1	12.046
82239148	GT-AG	0.0004329216020398	1521	rna-XM_005415583.3 15198784	2	28462129	28463649	Geospiza fortis 48883	CAG\|GTATGTAAGT...TTTATCTTGATA/TATATTTTTATG...TGCAG\|AAA	2	1	15.046
82239149	GT-AG	1.000000099473604e-05	789	rna-XM_005415583.3 15198784	3	28461281	28462069	Geospiza fortis 48883	CAG\|GTAATTTAAG...GCAGCTCTGACT/GCAGCTCTGACT...TGCAG\|GTG	1	1	17.9
82239150	GT-AG	1.000000099473604e-05	1444	rna-XM_005415583.3 15198784	4	28459127	28460570	Geospiza fortis 48883	ATG\|GTAAGAGGCT...GTTTCTTTAACT/GTTTCTTTAACT...TTCAG\|GTA	0	1	52.25
82239151	GT-AG	0.0001003829267072	518	rna-XM_005415583.3 15198784	5	28458123	28458640	Geospiza fortis 48883	AAG\|GTACACAATT...TTATATTTATCA/TTTATATTTATC...TTTAG\|GTT	0	1	75.762
82239152	GT-AG	1.000000099473604e-05	1834	rna-XM_005415583.3 15198784	6	28456145	28457978	Geospiza fortis 48883	AAG\|GTCATATATT...TCTATTTTACCT/TTCTATTTTACC...TAAAG\|ATG	0	1	82.729
82239153	GT-AG	3.0107770615308424e-05	1164	rna-XM_005415583.3 15198784	7	28454826	28455989	Geospiza fortis 48883	CAG\|GTACAGTGCA...TGATTTTTAATT/TTCTTACTGACT...TTTAG\|GTT	2	1	90.227

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);