introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 15121891

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Suggested facets: dinucleotide_pair, score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
81842769 GT-AG 0 1.000000099473604e-05 498 rna-XM_015411850.1 15121891 1 1441862 1442359 Gekko japonicus 146911 CTG|GTAAGTAAAT...TTTATGTTAATA/TTTATGTTAATA...GGCAG|GTC 0 1 5.371
81842770 GT-AG 0 1.000000099473604e-05 1292 rna-XM_015411850.1 15121891 2 1440447 1441738 Gekko japonicus 146911 TTG|GTGAGGGTAT...ATCTTCTTCTCT/TTTGCTCTTATG...CTTAG|ATG 0 1 15.857
81842771 GT-AG 0 1.000000099473604e-05 830 rna-XM_015411850.1 15121891 3 1439512 1440341 Gekko japonicus 146911 CAG|GTTTGAGGAT...ATTCTTTTAACT/ATTCTTTTAACT...TTTAG|TTG 0 1 24.808
81842772 GC-AG 0 1.000000099473604e-05 2232 rna-XM_015411850.1 15121891 4 1437158 1439389 Gekko japonicus 146911 TAG|GCAAGTAAAA...CCTTTCATAACT/CCTTTCATAACT...TTTAG|ATC 2 1 35.209
81842773 GT-AG 0 1.000000099473604e-05 2866 rna-XM_015411850.1 15121891 5 1434095 1436960 Gekko japonicus 146911 CAT|GTAAGTCTGT...GGTCTCTGATCT/AGGTCTCTGATC...AATAG|GTT 1 1 52.003
81842774 GT-AG 0 1.000000099473604e-05 2986 rna-XM_015411850.1 15121891 6 1430802 1433787 Gekko japonicus 146911 GAG|GTAAGTTGAG...CTTTCATTAAAG/AATACTTTCATT...TCCAG|GTC 2 1 78.176
81842775 GT-AG 0 0.0061469711112706 2741 rna-XM_015411850.1 15121891 7 1427877 1430617 Gekko japonicus 146911 ATA|GTACGTATCG...CTTTTCTTAAAA/AAAATACTAACT...TTCAG|ATT 0 1 93.862

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);