WtMTA: introns: 6 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 15103433

descending

id ▼	dinucleotide_pair	is_minor	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
81685831	GT-AG	0	1.000000099473604e-05	215	rna-XM_019504111.1 15103433	1	408832	409046	Gavialis gangeticus 94835	GCG\|GTGGGGCCCG...CTCTGCTGACCT/GCTCTGCTGACC...TCTAG\|TTC	0	1	16.0
81685832	GT-AG	0	1.000000099473604e-05	581	rna-XM_019504111.1 15103433	2	408149	408729	Gavialis gangeticus 94835	CAG\|GTGAGCGCCT...CCTGCTATAGCA/TAGCAAATAACG...CGCAG\|CGC	0	1	31.111
81685833	GT-AG	0	1.000000099473604e-05	883	rna-XM_019504111.1 15103433	3	407158	408040	Gavialis gangeticus 94835	GAG\|GTTTGTGTAG...TTTTTTCTATCT/ATTTTTTCTATC...TTTAG\|GGC	0	1	47.111
81685834	GT-AG	0	1.000000099473604e-05	1010	rna-XM_019504111.1 15103433	4	406012	407021	Gavialis gangeticus 94835	CAA\|GTAAGAACCC...AGGTCAATAAAA/GTAATGCTGAGA...TTCAG\|GCT	1	1	67.259
81685835	GT-AG	0	1.000000099473604e-05	1759	rna-XM_019504111.1 15103433	5	404185	405943	Gavialis gangeticus 94835	GGC\|GTAAGTAGAT...TGCTTCTTTATG/TTTATGGTGATT...TGCAG\|TGG	0	1	77.333
81685836	GT-AG	1	98.8766647277768	2196	rna-XM_019504111.1 15103433	6	401891	404086	Gavialis gangeticus 94835	CAA\|GTATCCTTTG...CTCTCCTTAACT/CTCTCCTTAACT...AACAG\|GAT	2	1	91.852

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);