WtMTA: introns: 10 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

10 rows where transcript_id = 14698758

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
78946260	GT-AG	0.0036288993701771	353	rna-XM_004287942.2 14698758	1	10344755	10345107	Fragaria vesca 57918	AAG\|GTCTCTCTTC...TCGAGTTTGATC/TTTGATCTAATT...TGCAG\|GTT	0	1	3.361
78946261	GT-AG	1.000000099473604e-05	95	rna-XM_004287942.2 14698758	2	10345192	10345286	Fragaria vesca 57918	AAA\|GTAATTCATA...ATTGTTGTGATA/ATATCACTGATA...TGCAG\|GGG	0	1	5.904
78946262	GT-AG	1.6144690396658052	650	rna-XM_004287942.2 14698758	3	10345301	10345950	Fragaria vesca 57918	AGT\|GTATGTTTCC...CTTTTCTTAAAG/ACAGTAATCATT...AGCAG\|TTG	2	1	6.328
78946263	GT-AG	1.000000099473604e-05	688	rna-XM_004287942.2 14698758	4	10346088	10346775	Fragaria vesca 57918	CTG\|GTTAGCTCTG...TATCTCTTAGAG/CTGATATTAACA...TGCAG\|TGG	1	1	10.475
78946264	GT-AG	1.000000099473604e-05	382	rna-XM_004287942.2 14698758	5	10346814	10347195	Fragaria vesca 57918	GAG\|GTCTGGCATC...ATTTCCTTAATG/CATTTCCTTAAT...ATTAG\|GAC	0	1	11.626
78946265	GT-AG	3.407525998971642e-05	347	rna-XM_004287942.2 14698758	6	10347295	10347641	Fragaria vesca 57918	AAG\|GTACAATTGA...TTTTTGTTATTC/TTGTTATTCACC...ACCAG\|GAC	0	1	14.623
78946266	GT-AG	1.000000099473604e-05	140	rna-XM_004287942.2 14698758	7	10348005	10348144	Fragaria vesca 57918	CAG\|GTAAGATATT...GCATTGTTAATT/GCATTGTTAATT...TGTAG\|CAT	0	1	25.613
78946267	GT-AG	1.000000099473604e-05	131	rna-XM_004287942.2 14698758	8	10348742	10348872	Fragaria vesca 57918	CAG\|GTAGGACAAT...ATATCTTTGACT/ATATCTTTGACT...TGTAG\|AAT	0	1	43.688
78946268	GT-AG	2.0353994225112652e-05	217	rna-XM_004287942.2 14698758	9	10349467	10349683	Fragaria vesca 57918	AAG\|GTATGACCTT...TGATACTTGACT/ATTATATTCATG...TGTAG\|CAT	0	1	61.671
78946269	GT-AG	0.0002499566867891	156	rna-XM_004287942.2 14698758	10	10350296	10350451	Fragaria vesca 57918	CAG\|GTATTATATG...AATCTATTAACA/CATCTGTTTATT...TGCAG\|CAT	0	1	80.2

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);