WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 14698742

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
78946070	GT-AG	1.000000099473604e-05	88	rna-XM_004287657.2 14698742	2	7583241	7583328	Fragaria vesca 57918	CTG\|GTTCGTTAAA...TTGATTTTACTG/GTTGATTTTACT...CGCAG\|AAG	1	1	11.748
78946071	GT-AG	1.000000099473604e-05	84	rna-XM_004287657.2 14698742	3	7583444	7583527	Fragaria vesca 57918	TAG\|GTGATCATGC...TTCGTTTTAGTT/GTTCGTTTTAGT...TGCAG\|ATT	2	1	14.98
78946072	GT-AG	1.000000099473604e-05	131	rna-XM_004287657.2 14698742	4	7583652	7583782	Fragaria vesca 57918	AAA\|GTGAGTTCCA...ATTTTTGTGAAT/ATGCTGCTCATG...TTTAG\|GTC	0	1	18.465
78946073	GT-AG	0.022748626726496	108	rna-XM_004287657.2 14698742	5	7583864	7583971	Fragaria vesca 57918	GAG\|GTATGCCTCT...AATCTTTTAATG/GGTAGATTCATT...GTAAG\|GTG	0	1	20.742
78946074	GT-AG	0.0002089683420074	290	rna-XM_004287657.2 14698742	6	7584317	7584606	Fragaria vesca 57918	CAG\|GTGACTTCTC...AAAACTTTAATG/ATTATATTAACC...AACAG\|CTA	0	1	30.438
78946075	GT-AG	0.0004425699001234	82	rna-XM_004287657.2 14698742	7	7584768	7584849	Fragaria vesca 57918	GCC\|GTAAGTCTCT...ATCCCCTTACTG/TTTTGTTTAACT...TGCAG\|CCT	2	1	34.963
78946076	GT-AG	0.0081325682576548	602	rna-XM_004287657.2 14698742	8	7585689	7586290	Fragaria vesca 57918	CTG\|GTATGCAACC...CAACTTTTGATT/TGTTATCTAACT...TTCAG\|ATC	1	1	58.544

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);