WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 14698709

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
78945680	GT-AG	1.000000099473604e-05	104	rna-XM_011472420.1 14698709	1	6157143	6157246	Fragaria vesca 57918	ATG\|GTGAAACTAC...TAATTTTCAATT/ATAATTTTCAAT...GAAAG\|ATG	1	1	15.181
78945681	GT-AG	1.000000099473604e-05	101	rna-XM_011472420.1 14698709	2	6155855	6155955	Fragaria vesca 57918	TAT\|GTTAAGTGTG...TATGCTTGAGTT/CCAATTATCACT...ATCAG\|GTG	0	1	42.947
78945682	GT-AG	3.974760163248546e-05	1887	rna-XM_011472420.1 14698709	3	6153442	6155328	Fragaria vesca 57918	CAG\|GTAACAACTT...GTTTCCTTGGTC/CTTGGTCTCACT...TGTAG\|CCA	1	1	55.251
78945683	GT-AG	0.0003529087124131	160	rna-XM_011472420.1 14698709	4	6153265	6153424	Fragaria vesca 57918	AAG\|GTAACCCCAT...TTTGTTATGATG/TTTGTTATGATG...TGTAG\|GGA	0	1	55.649
78945684	GT-AG	1.000000099473604e-05	97	rna-XM_011472420.1 14698709	5	6153003	6153099	Fragaria vesca 57918	ACT\|GTGGGTGTGC...TTGTTTTTAAGA/TTGTTTTTAAGA...ATCAG\|CTT	0	1	59.509
78945685	GT-AG	1.000000099473604e-05	149	rna-XM_011472420.1 14698709	6	6152744	6152892	Fragaria vesca 57918	TAT\|GTGAGTATTT...TATGTCTTGGTT/CATTAACTGATT...TGCAG\|GAT	2	1	62.082
78945686	GT-AG	1.000000099473604e-05	111	rna-XM_011472420.1 14698709	7	6152321	6152431	Fragaria vesca 57918	CAG\|GTTCAGAATC...AATTCTTTGTTT/GTTTGTTCTATT...AACAG\|TGT	2	1	69.38
78945687	GT-AG	0.2352102070488136	85	rna-XM_011472420.1 14698709	8	6152091	6152175	Fragaria vesca 57918	GAG\|GTAGCCTAAT...AGTTTCTTATTT/CAGTTTCTTATT...TTCAG\|TCC	0	1	72.772

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);