WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 14698702

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
78945551	GT-AG	1.000000099473604e-05	696	rna-XM_011459281.1 14698702	2	14025216	14025911	Fragaria vesca 57918	ATG\|GTGTGTGCAT...CATTTCTTTGTA/CAATTGCTCACT...TGCAG\|TCA	1	1	31.03
78945552	TT-AG	1.000000099473604e-05	1289	rna-XM_011459281.1 14698702	3	14023615	14024903	Fragaria vesca 57918	CAA\|TTTAAGCATC...TCAATTTTATTC/ATTTTATTCACT...TACAG\|GTA	1	1	37.189
78945553	GT-AG	0.0022983817950731	88	rna-XM_011459281.1 14698702	4	14023360	14023447	Fragaria vesca 57918	AAG\|GTATATTCAA...CCATCCTGAATT/CCTGAATTAATG...TTCAG\|GAA	0	1	40.486
78945554	GT-AG	1.000000099473604e-05	2166	rna-XM_011459281.1 14698702	5	14021033	14023198	Fragaria vesca 57918	CCA\|GTGTTGAAAA...TTGGTCTGAATT/AAAGTTTTCATC...TTTAG\|GGT	2	1	43.664
78945555	GT-AG	1.000000099473604e-05	705	rna-XM_011459281.1 14698702	6	14018580	14019284	Fragaria vesca 57918	CTG\|GTGAGTTCTT...TGTTTCTTATTA/GTGTTTCTTATT...TATAG\|TGA	1	1	78.168
78945556	GT-AG	1.000000099473604e-05	147	rna-XM_011459281.1 14698702	7	14017764	14017910	Fragaria vesca 57918	CTG\|GTTAGTTTGT...TTCCTTTTGATG/TTCCTTTTGATG...TGCAG\|ATT	1	1	91.374
78945557	GT-AG	0.0664859182712279	114	rna-XM_011459281.1 14698702	8	14017480	14017593	Fragaria vesca 57918	AAG\|GTACCTTGTA...ATGGCTTTATTC/GCTTTATTCATT...CACAG\|GAT	0	1	94.73
78956559	GT-AG	0.0001765575048766	193	rna-XM_011459281.1 14698702	1	14027104	14027296	Fragaria vesca 57918	AAG\|GTACTGTCTT...GTTTTCTTATAT/GGTTTTCTTATA...TGCAG\|ATT		0	8.981

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);