introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 14514716

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id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
77700223 GT-AG 0 1.000000099473604e-05 2860 rna-XM_027784465.1 14514716 1 5776664 5779523 Falco peregrinus 8954 CAG|GTAATAAGAG...TAATACTTAATC/TGTATACTAATA...TCAAG|GGA 0 1 8.251
77700224 GT-AG 0 1.000000099473604e-05 2861 rna-XM_027784465.1 14514716 2 5779593 5782453 Falco peregrinus 8954 AAG|GTAATTCAGT...TGTTCTGTAATG/AATGTGTTGACA...TTTAG|GGT 0 1 10.249
77700225 GT-AG 0 1.000000099473604e-05 469 rna-XM_027784465.1 14514716 3 5782537 5783005 Falco peregrinus 8954 CAA|GTAAGTTGCC...GTGGCTTTCATG/GTGGCTTTCATG...TTTAG|GCA 2 1 12.652
77700226 GT-AG 0 0.0013632101540006 509 rna-XM_027784465.1 14514716 4 5783103 5783611 Falco peregrinus 8954 TGG|GTATGTTGCA...GTGCTCTCATTT/TGTGCTCTCATT...GACAG|CAC 0 1 15.46
77700227 GT-AG 0 1.03224411238019e-05 2113 rna-XM_027784465.1 14514716 5 5783642 5785754 Falco peregrinus 8954 GCG|GTAGGTTACT...ATATTTTTCATT/ATATTTTTCATT...TGAAG|GGG 0 1 16.329
77700228 GT-AG 0 7.849826244787374e-05 379 rna-XM_027784465.1 14514716 6 5785951 5786329 Falco peregrinus 8954 TTG|GTAAGCAGCA...TTTCTTTTAATT/TAATTTCTGACT...TCTAG|ATG 1 1 22.003
77700362 GT-AG 0 1.000000099473604e-05 3177 rna-XM_027784465.1 14514716 7 5788416 5791592 Falco peregrinus 8954 GTG|GTAAGTACTT...TGATCTTTACTA/CTGATCTTTACT...CCTAG|GTG   0 82.397

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);