WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 14514703

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
77700154	GT-AG	1.000000099473604e-05	1780	rna-XM_005228702.3 14514703	1	10623119	10624898	Falco peregrinus 8954	AAG\|GTAAGAAATA...TAGGCCTTGATG/TGATCCCTCACT...CCCAG\|GTT	0	1	6.916
77700155	GT-AG	1.000000099473604e-05	1210	rna-XM_005228702.3 14514703	2	10625074	10626283	Falco peregrinus 8954	GAG\|GTAATAAAGG...ATATATTTATTT/ATTTATTTCACC...TTTAG\|CCC	1	1	23.727
77700156	GT-AG	1.000000099473604e-05	838	rna-XM_005228702.3 14514703	3	10626414	10627251	Falco peregrinus 8954	GAG\|GTAAGGAGTG...ATTTTTTTGGTT/ACAATCATGATT...TTTAG\|AGA	2	1	36.215
77700157	GT-AG	0.0001426171533777	511	rna-XM_005228702.3 14514703	4	10627321	10627831	Falco peregrinus 8954	CAG\|GTAATCATTA...GTTGCCTTTTCT/GATATTGTAAGT...ACTAG\|ATC	2	1	42.843
77700158	GT-AG	1.000000099473604e-05	763	rna-XM_005228702.3 14514703	5	10627951	10628713	Falco peregrinus 8954	GAG\|GTGAGCATTA...ATTTCTTTTGCT/TTTTGTGTCAGC...CAAAG\|GAG	1	1	54.275
77700159	GT-AG	0.0001053249434105	1283	rna-XM_005228702.3 14514703	6	10628855	10630137	Falco peregrinus 8954	AAG\|GTATGTGTGG...GTATTCTTGCTT/GTTTGTGTAATA...AACAG\|GAG	1	1	67.819
77700160	GT-AG	1.000000099473604e-05	634	rna-XM_005228702.3 14514703	7	10630261	10630894	Falco peregrinus 8954	CTG\|GTAGGTGCGA...TTCTCTTTATTC/TTTCTCTTTATT...ACCAG\|GCG	1	1	79.635

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);