WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 14514681

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
77699992	GT-AG	2.5362345272682683e-05	1666	rna-XM_013304553.2 14514681	1	5470102	5471767	Falco peregrinus 8954	CAG\|GTAAGCAAAG...TTTCCCTTGATC/TTTCCCTTGATC...TCCAG\|TTT	2	1	1.97
77699993	GT-AG	1.000000099473604e-05	96	rna-XM_013304553.2 14514681	2	5469911	5470006	Falco peregrinus 8954	CAG\|GTAAGGGCAT...TTCTTTTTAATG/ATATCTCTGATT...TATAG\|AAA	1	1	9.167
77699994	GT-AG	1.000000099473604e-05	2274	rna-XM_013304553.2 14514681	3	5467378	5469651	Falco peregrinus 8954	AAG\|GTGGGTATTT...GTTCCCCTCGTT/TGGGTGCTCACC...TGCAG\|GAA	2	1	28.788
77699995	GT-AG	1.000000099473604e-05	1444	rna-XM_013304553.2 14514681	4	5465759	5467202	Falco peregrinus 8954	AAG\|GTAGAACTTT...CGAGCCATAACC/CAGGCTGTAACC...CCCAG\|GAC	0	1	42.045
77699996	GT-AG	1.000000099473604e-05	1146	rna-XM_013304553.2 14514681	5	5464438	5465583	Falco peregrinus 8954	TTG\|GTAAATACCG...CTAGCCCTGACT/CTAGCCCTGACT...TCTAG\|AAC	1	1	55.303
77699997	GT-AG	1.000000099473604e-05	1269	rna-XM_013304553.2 14514681	6	5463103	5464371	Falco peregrinus 8954	TCG\|GTAAGGCCCA...GGGTTTTTAATT/GGGTTTTTAATT...AACAG\|GCT	1	1	60.303
77699998	GT-AG	4.719826255946101e-05	2384	rna-XM_013304553.2 14514681	7	5460583	5462966	Falco peregrinus 8954	ACA\|GTAAGTCTGG...TGTTCTTTTTCT/AAGGATTTAACA...TCCAG\|AGA	2	1	70.606
77699999	GT-AG	0.0017916191594014	1291	rna-XM_013304553.2 14514681	8	5459146	5460436	Falco peregrinus 8954	AAG\|GTAACTAGTG...ATTTCTTTACTT/CATTTCTTTACT...TCCAG\|CTG	1	1	81.667

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);