introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 14514679

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
77699976 GT-AG 0 1.000000099473604e-05 422 rna-XM_027790015.1 14514679 1 9516934 9517355 Falco peregrinus 8954 CAG|GTAAGGACTG...TGACATTTAACA/AGAGATTTGACA...TTTAG|AAA 1 1 16.853
77699977 GT-AG 0 1.000000099473604e-05 1174 rna-XM_027790015.1 14514679 2 9515689 9516862 Falco peregrinus 8954 AAG|GTAATTCAGT...TTTGTCTTGCAT/ATATAGGTTATT...TAAAG|AAA 0 1 22.148
77699978 GT-AG 0 0.0024739689316501 729 rna-XM_027790015.1 14514679 3 9514829 9515557 Falco peregrinus 8954 CAG|GTACCTCAAG...GATAGCTTGATT/TCGCTTCTAATT...GCCAG|ATC 2 1 31.916
77699979 GT-AG 0 1.000000099473604e-05 450 rna-XM_027790015.1 14514679 4 9514308 9514757 Falco peregrinus 8954 CAG|GTAAAGTCTA...TTACTCTTCCTT/CAATTATTCATT...TTCAG|GTG 1 1 37.211
77699980 GT-AG 0 1.000000099473604e-05 1362 rna-XM_027790015.1 14514679 5 9512787 9514148 Falco peregrinus 8954 GTG|GTAAGCAAAA...TTGTCCTTTTTT/TAGATTTTTACA...ATTAG|GAA 1 1 49.068
77699981 GT-AG 0 7.20507786533584e-05 761 rna-XM_027790015.1 14514679 6 9511817 9512577 Falco peregrinus 8954 TCT|GTAAGTTGTT...GTTTCATTAAGT/TGCTGTTTCATT...TCTAG|GAT 0 1 64.653
77699982 GT-AG 0 1.000000099473604e-05 257 rna-XM_027790015.1 14514679 7 9511381 9511637 Falco peregrinus 8954 CAG|GTCTTATGTT...CTCGTCTTCATG/CTCGTCTTCATG...TTCAG|GTA 2 1 78.001
77699983 GT-AG 0 1.000000099473604e-05 461 rna-XM_027790015.1 14514679 8 9510767 9511227 Falco peregrinus 8954 AAG|GTAAATAATT...TTGCTTTTACTT/ATTGCTTTTACT...TACAG|TTG 2 1 89.411

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);