WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 14514665

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
77699835	GT-AG	8.055098275347676e-05	6730	rna-XM_005228655.2 14514665	1	3017157	3023886	Falco peregrinus 8954	CTG\|GTATGTAAAA...TGTGCATTAAAG/GACAAATTCATT...TTCAG\|CCA	1	1	10.248
77699836	GT-AG	1.000000099473604e-05	3033	rna-XM_005228655.2 14514665	2	3014010	3017042	Falco peregrinus 8954	TAG\|GTAAGCAAAG...GGTGTCTTATGC/TGGTGTCTTATG...TGTAG\|GTG	1	1	16.811
77699837	GT-AG	1.000000099473604e-05	4602	rna-XM_005228655.2 14514665	3	3009252	3013853	Falco peregrinus 8954	TAG\|GTAAGGAACA...AGTGCTTTGTTT/CATACACTAACG...CATAG\|GTG	1	1	25.792
77699838	GT-AG	4.550989533582123e-05	3838	rna-XM_005228655.2 14514665	4	3005265	3009102	Falco peregrinus 8954	CTG\|GTAAGTTTGT...CTTTCTTTAGAC/AAAGTGTTTATC...TACAG\|TGG	0	1	34.37
77699839	GT-AG	1.000000099473604e-05	1839	rna-XM_005228655.2 14514665	5	3003282	3005120	Falco peregrinus 8954	CTG\|GTAAGTGATG...TAGCCCCCAATG/ATGCTGCCCATT...TGCAG\|ACA	0	1	42.66
77699840	GT-AG	1.000000099473604e-05	1189	rna-XM_005228655.2 14514665	6	3001939	3003127	Falco peregrinus 8954	CAG\|GTAAATAATT...TGACTATTAATG/ATGTTACTAACA...TGCAG\|CCT	1	1	51.526
77699841	GT-AG	1.000000099473604e-05	729	rna-XM_005228655.2 14514665	7	3000992	3001720	Falco peregrinus 8954	AAT\|GTGAGTTTGC...CTGCCCTTTTTT/AAACATCTAACA...TGCAG\|GCT	0	1	64.076

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);