WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 14514640

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
77699508	GT-AG	1.000000099473604e-05	957	rna-XM_005228744.2 14514640	1	6903492	6904448	Falco peregrinus 8954	CAG\|GTAGAATTGC...TCTTTTTTATGT/ATCTTTTTTATG...CTTAG\|GAA	1	1	3.569
77699509	GT-AG	1.5840350076128917e-05	2922	rna-XM_005228744.2 14514640	2	6904615	6907536	Falco peregrinus 8954	TGA\|GTAAGTCTTT...TATATTTTCACT/TATATTTTCACT...TCTAG\|GAT	2	1	9.158
77699510	GT-AG	1.000000099473604e-05	362	rna-XM_005228744.2 14514640	3	6907673	6908034	Falco peregrinus 8954	CAG\|GTAATTTACA...TGTATTTTATGC/ATGTATTTTATG...TGAAG\|TTG	0	1	13.737
77699511	GT-AG	1.000000099473604e-05	626	rna-XM_005228744.2 14514640	4	6908200	6908825	Falco peregrinus 8954	AGA\|GTGAGTTGTT...TCATCTTTTACT/CTCTTCCTCATT...CACAG\|TTC	0	1	19.293
77699512	GT-AG	0.0094340848530916	3186	rna-XM_005228744.2 14514640	5	6908895	6912080	Falco peregrinus 8954	CAG\|GTAACTTCTG...GTGTCTTTATTT/CTTTGTTTGATT...TCCAG\|GTT	0	1	21.616
77699513	GT-AG	3.213515977921517e-05	2168	rna-XM_005228744.2 14514640	6	6912312	6914479	Falco peregrinus 8954	CAG\|GTACTTGTGA...GCTTTCTGAATT/GGCTTTCTGAAT...TGCAG\|AGG	0	1	29.394
77699514	GT-AG	1.000000099473604e-05	10372	rna-XM_005228744.2 14514640	7	6916095	6926466	Falco peregrinus 8954	CTG\|GTAAGACTCC...TGTTTCTTATAA/CTGTTTCTTATA...AACAG\|AGA	1	1	83.771
77699515	GT-AG	2.6779590189230487e-05	1720	rna-XM_005228744.2 14514640	8	6926667	6928386	Falco peregrinus 8954	GAG\|GTACTTACAG...TGGATTTTATCC/ACTGGTCTCATT...CCTAG\|GGG	0	1	90.505
77699516	GT-AG	1.000000099473604e-05	792	rna-XM_005228744.2 14514640	9	6928523	6929314	Falco peregrinus 8954	CTG\|GTAGGAAACA...ATGTGTTTTATT/ATGTGTTTTATT...CACAG\|TAG	1	1	95.084

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);