WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 14477256

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
77369085	GT-AG	1.000000099473604e-05	1395	rna-XM_005431859.3 14477256	1	149384	150778	Falco cherrug 345164	AAT\|GTAAGTGAAC...GTTATTTTATTC/AGTTATTTTATT...CTCAG\|GCC	1	1	5.267
77369086	GT-AG	1.000000099473604e-05	91	rna-XM_005431859.3 14477256	2	149209	149299	Falco cherrug 345164	TAG\|GTAAGAGACA...TTTTCCTTGCAT/CAGGGAATCATT...TATAG\|GAG	1	1	11.871
77369087	GT-AG	0.0013333865823878	318	rna-XM_005431859.3 14477256	3	148787	149104	Falco cherrug 345164	GTG\|GTATGTATCA...GAATCTGTGATC/ACAAGTTTAAGA...TGCAG\|GTT	0	1	20.047
77369088	GT-AG	1.000000099473604e-05	774	rna-XM_005431859.3 14477256	4	147912	148685	Falco cherrug 345164	CTG\|GTAAGAGCAC...GTATCTTTATAT/GGTATCTTTATA...TCTAG\|GTA	2	1	27.987
77369089	GT-AG	3.308751430721121e-05	771	rna-XM_005431859.3 14477256	5	146857	147627	Falco cherrug 345164	CAG\|GTATAAGTGT...TCAAACTTAATG/TATGGATTCAAA...AACAG\|ATC	1	1	50.314
77369090	GT-AG	1.000000099473604e-05	2942	rna-XM_005431859.3 14477256	6	143708	146649	Falco cherrug 345164	CAG\|GTAGGTACCT...CTACCGTTATTT/CCGTTATTTATC...TGCAG\|GTG	1	1	66.588
77369091	GT-AG	1.000000099473604e-05	560	rna-XM_005431859.3 14477256	7	143046	143605	Falco cherrug 345164	AAG\|GTAAAGATTT...TACTTCTTCTTT/AGCAGACTTATT...TACAG\|GAA	1	1	74.607

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);