introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 14477217

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
77368812 GT-AG 0 1.000000099473604e-05 307 rna-XM_027803698.1 14477217 1 3377636 3377942 Falco cherrug 345164 GCG|GTGGGAAGGG...GCAACGTTAACC/CTGTGCTTTATC...TTCAG|AGC 0 1 3.17
77368813 GT-AG 0 1.000000099473604e-05 1576 rna-XM_027803698.1 14477217 2 3378099 3379674 Falco cherrug 345164 GAG|GTGAGCCCTG...ACGTTCTTTTTT/GACAAACTCAAA...ATTAG|GTT 0 1 18.156
77368814 GT-AG 0 1.000000099473604e-05 962 rna-XM_027803698.1 14477217 3 3379792 3380753 Falco cherrug 345164 CTG|GTGAGAAGGC...CTGGTTTTACTG/ACTGTACTCATT...GATAG|GTG 0 1 29.395
77368815 GT-AG 0 0.0001015313352516 1048 rna-XM_027803698.1 14477217 4 3380888 3381935 Falco cherrug 345164 AAG|GTAAACCTCT...CCCTTCTTATTA/ATTATTTTGATG...TATAG|GGA 2 1 42.267
77368816 GT-AG 0 1.000000099473604e-05 2374 rna-XM_027803698.1 14477217 5 3382031 3384404 Falco cherrug 345164 TTG|GTGCGTAGCT...TGTGTCTAACTG/TTGTGTCTAACT...AACAG|GTG 1 1 51.393
77368817 GT-AG 0 1.6466998345352546e-05 3174 rna-XM_027803698.1 14477217 6 3384539 3387712 Falco cherrug 345164 GAG|GTAATTTGTC...TTGTTCTTTGTT/AAAAAAATTACT...TTCAG|GGT 0 1 64.265
77368818 GT-AG 0 1.000000099473604e-05 1224 rna-XM_027803698.1 14477217 7 3387818 3389041 Falco cherrug 345164 CAG|GTAAGCCCAG...TGTATTTTAACT/TTAAATTTCATT...TCTAG|GAG 0 1 74.352
77368819 GT-AG 0 1.000000099473604e-05 480 rna-XM_027803698.1 14477217 8 3389156 3389635 Falco cherrug 345164 AAG|GTAAGAGGTG...GTTCCCCTATCA/ACCGGTCTAATA...CTTAG|GTC 0 1 85.303

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);