WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 14452944

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
77225704	GT-AG	1.000000099473604e-05	626	rna-XM_021046819.2 14452944	1	1396987	1397612	Exaiptasia diaphana 2652724	AAG\|GTGAGGCAAA...TTCGTTTTAAAT/CTAGAATTAACT...AACAG\|ATA	0	1	9.524
77225705	GT-AG	0.0050475930675723	114	rna-XM_021046819.2 14452944	2	1396829	1396942	Exaiptasia diaphana 2652724	AAG\|GTATCACGTC...TTCTCTTTGTCT/CATTTATTCACT...TCTAG\|TAT	2	1	15.344
77225706	GT-AG	5.609921400379952e-05	511	rna-XM_021046819.2 14452944	3	1396254	1396764	Exaiptasia diaphana 2652724	GAG\|GTAACTGATG...GTTTTTTAAATA/TATGTATTTAGT...TGTAG\|GTG	0	1	23.81
77225707	GT-AG	0.0010415458680295	555	rna-XM_021046819.2 14452944	4	1395561	1396115	Exaiptasia diaphana 2652724	AGT\|GTATGTGGCA...AAGGTCATAATG/ATAATACTTAAG...GGCAG\|TGT	0	1	42.063
77225708	GT-AG	0.0013144704688442	541	rna-XM_021046819.2 14452944	5	1394912	1395452	Exaiptasia diaphana 2652724	GAG\|GTATAATGAT...GTAACCTTATTT/CCTTATTTTATA...TTCAG\|ACA	0	1	56.349
77225709	GT-AG	1.000000099473604e-05	170	rna-XM_021046819.2 14452944	6	1394704	1394873	Exaiptasia diaphana 2652724	TTG\|GTAGGTAAAA...AACAATTTGACT/AACAATTTGACT...TCTAG\|GGT	2	1	61.376
77225710	GT-AG	4.888063380835189e-05	501	rna-XM_021046819.2 14452944	7	1394113	1394613	Exaiptasia diaphana 2652724	CAC\|GTAAGTATTT...CCATCCTTATAA/TCCATTTTTATT...TTTAG\|GTG	2	1	73.28
77225711	GT-AG	1.000000099473604e-05	599	rna-XM_021046819.2 14452944	8	1393474	1394072	Exaiptasia diaphana 2652724	AGT\|GTGAGTATTT...TAATATTTATTT/CTAATATTTATT...TGCAG\|GCA	0	1	78.571

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);