WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 14452929

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
77225638	GT-AG	0.003768643993356	542	rna-XM_028658659.1 14452929	2	1595072	1595613	Exaiptasia diaphana 2652724	AAA\|GTATGTAATG...TCTTTCATAACT/TTTTCTTTCATA...TGAAG\|AAA	1	1	20.288
77225639	GT-AG	1.000000099473604e-05	109	rna-XM_028658659.1 14452929	3	1594798	1594906	Exaiptasia diaphana 2652724	CAG\|GTTTGGATAA...TATAATTTGACT/TATAATTTGACT...AATAG\|GTG	1	1	36.154
77225640	GT-AG	1.000000099473604e-05	103	rna-XM_028658659.1 14452929	4	1594655	1594757	Exaiptasia diaphana 2652724	GAG\|GTAAAACACT...TTTGGCTTATCA/TTTATGTTTACT...TGTAG\|AAA	2	1	40.0
77225641	GT-AG	0.0058240729631897	565	rna-XM_028658659.1 14452929	5	1593983	1594547	Exaiptasia diaphana 2652724	AAG\|GTATTTATAT...TTTTTCTTATTT/CTTTTTCTTATT...TGTAG\|AAT	1	1	50.288
77225642	GT-AG	1.000000099473604e-05	335	rna-XM_028658659.1 14452929	6	1593546	1593880	Exaiptasia diaphana 2652724	TAG\|GTAAGATTAT...TTCTCATTAATT/TTTATTCTCATT...TTAAG\|TGG	1	1	60.096
77225643	GT-AG	1.000000099473604e-05	292	rna-XM_028658659.1 14452929	7	1593171	1593462	Exaiptasia diaphana 2652724	GTT\|GTAAGTAGAA...ATATCCTCACTC/AATATCCTCACT...TATAG\|CTT	0	1	68.077
77225644	GT-AG	1.000000099473604e-05	846	rna-XM_028658659.1 14452929	8	1592220	1593065	Exaiptasia diaphana 2652724	AAG\|GTAAGAGAAA...AAGTTCTTAAAT/TTGATGCTAATT...TTCAG\|GAT	0	1	78.173
77225645	GT-AG	2.4933445552163923e-05	548	rna-XM_028658659.1 14452929	9	1591558	1592105	Exaiptasia diaphana 2652724	CAG\|GTTTGTTGCC...TATTCCTGATTG/CTATTCCTGATT...GACAG\|GAA	0	1	89.135

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);