introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 14452927

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
77225627 GT-AG 0 1.000000099473604e-05 89 rna-XM_021038824.2 14452927 1 1451094 1451182 Exaiptasia diaphana 2652724 AAG|GTAAAGAATG...ATTGCTTTGATT/ATTGCTTTGATT...TCCAG|GTA 0 1 16.566
77225628 GT-AG 0 1.000000099473604e-05 86 rna-XM_021038824.2 14452927 2 1450944 1451029 Exaiptasia diaphana 2652724 ACG|GTTAGTGCAG...TGTGCCTTTTCT/CCTTTTCTCAAA...AATAG|ATG 1 1 22.992
77225629 GT-AG 0 1.000000099473604e-05 1127 rna-XM_021038824.2 14452927 3 1449762 1450888 Exaiptasia diaphana 2652724 AAG|GTGAGGTAGA...TTTTTCTTTATT/TTTTTCTTTATT...TTCAG|TGC 2 1 28.514
77225630 GT-AG 0 1.000000099473604e-05 509 rna-XM_021038824.2 14452927 5 1448432 1448940 Exaiptasia diaphana 2652724 AAG|GTACAAATCA...ATATCCTTTGTG/TAATCACTCAAA...TTTAG|GAA 0 1 43.675
77225631 GT-AG 0 1.000000099473604e-05 884 rna-XM_021038824.2 14452927 6 1447351 1448234 Exaiptasia diaphana 2652724 CTG|GTATGAGTTA...GGATACTGACTA/AGGATACTGACT...CACAG|GAA 2 1 63.454
77225632 GT-AG 0 1.000000099473604e-05 283 rna-XM_021038824.2 14452927 7 1446980 1447262 Exaiptasia diaphana 2652724 CAG|GTAGGTACAA...TTTGTCTTAAGT/TGGAATCTCACC...TATAG|GTT 0 1 72.289
77225633 GT-AG 0 1.120919801613649e-05 1058 rna-XM_021038824.2 14452927 8 1445850 1446907 Exaiptasia diaphana 2652724 ACT|GTAAGTGTAG...ATTTCTTTTTCT/CTTTTTCTGATT...AACAG|GGA 0 1 79.518
77225634 GT-AG 0 1.000000099473604e-05 6038 rna-XM_021038824.2 14452927 9 1439749 1445786 Exaiptasia diaphana 2652724 CAA|GTAAGTATGT...TATCCTCTATTT/AATCTGTATATT...TACAG|AGA 0 1 85.843

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);