WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 14452925

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
77225607	GT-AG	1.000000099473604e-05	616	rna-XM_021038934.2 14452925	2	1478589	1479204	Exaiptasia diaphana 2652724	AGT\|GTAAGTGCAG...ATTTTTTTCATT/ATTTTTTTCATT...CCCAG\|AAA	2	1	15.754
77225608	GT-AG	1.000000099473604e-05	504	rna-XM_021038934.2 14452925	3	1479374	1479877	Exaiptasia diaphana 2652724	GAG\|GTAAAAAAAG...AAGACCTTACCA/CAAGACCTTACC...TTCAG\|CTT	0	1	31.988
77225609	GT-AG	0.004451446449031	525	rna-XM_021038934.2 14452925	5	1480268	1480792	Exaiptasia diaphana 2652724	CAA\|GTATGATTTA...GTATCCGTGAAG/TTGTAGGTGAAT...TTCAG\|ATA	0	1	55.62
77225610	GT-AG	0.0008969235301115	81	rna-XM_021038934.2 14452925	6	1480891	1480971	Exaiptasia diaphana 2652724	GGT\|GTAAGTTACC...TTTGTTTTAATA/TTTGTTTTAATA...TTTAG\|ATA	2	1	65.034
77225611	GT-AG	0.0001678567062159	366	rna-XM_021038934.2 14452925	7	1481009	1481374	Exaiptasia diaphana 2652724	CAG\|GTAAACTTGT...TTGTTTTTGTTT/ACTGTTGTTATT...TGCAG\|TAT	0	1	68.588
77225612	GT-AG	1.000000099473604e-05	162	rna-XM_021038934.2 14452925	8	1481469	1481630	Exaiptasia diaphana 2652724	AAG\|GTTTGTCAAA...AATTTTTTGATT/AATTTTTTGATT...ATTAG\|GAG	1	1	77.618
77225613	GT-AG	1.000000099473604e-05	10112	rna-XM_021038934.2 14452925	9	1481749	1491860	Exaiptasia diaphana 2652724	GAG\|GTAAGTGATT...TAAAACTTAATA/ATAAAACTTAAT...CTCAG\|GTG	2	1	88.953
77225614	GT-AG	1.000000099473604e-05	760	rna-XM_021038934.2 14452925	10	1491908	1492667	Exaiptasia diaphana 2652724	CAT\|GTGAGTATAT...ACCTCTGTACTA/CTCTGCATTACG...TGCAG\|GTT	1	1	93.468

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);