introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 14452920

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id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
77225581 GT-AG 0 0.0003052661563555 748 rna-XM_021043403.2 14452920 1 939229 939976 Exaiptasia diaphana 2652724 GAG|GTAAATTTTG...ATTGTTTTAATT/ATTGTTTTAATT...CTCAG|GCT 0 1 11.911
77225582 GT-AG 0 2.66640826794484e-05 161 rna-XM_021043403.2 14452920 2 940058 940218 Exaiptasia diaphana 2652724 AGA|GTAAGTGCTG...ATACCTTTAGTT/GATAAACTTACG...TTCAG|CTT 0 1 19.391
77225583 GT-AG 0 1.000000099473604e-05 99 rna-XM_021043403.2 14452920 3 940268 940366 Exaiptasia diaphana 2652724 CAG|GTAAAATCCA...GTTATCTTAATT/GTTATCTTAATT...TTCAG|CCG 1 1 23.915
77225584 GT-AG 0 4.976198462631379e-05 137 rna-XM_021043403.2 14452920 4 940510 940646 Exaiptasia diaphana 2652724 GTG|GTACGGTTAG...ATTTTTTTATTG/AATTTTTTTATT...TTTAG|GTA 0 1 37.119
77225585 GT-AG 0 1.000000099473604e-05 456 rna-XM_021043403.2 14452920 5 940806 941261 Exaiptasia diaphana 2652724 GAG|GTAAAAATTT...TTTTCTTTACTT/GTTTTCTTTACT...ATCAG|TTA 0 1 51.801
77225586 GT-AG 0 1.000000099473604e-05 235 rna-XM_021043403.2 14452920 6 941341 941575 Exaiptasia diaphana 2652724 AAG|GTACAGTCTA...TTCAGTTTGATC/TTCAGTTTGATC...TCTAG|GTT 1 1 59.095
77225587 GT-AG 0 1.000000099473604e-05 194 rna-XM_021043403.2 14452920 7 941704 941897 Exaiptasia diaphana 2652724 GTG|GTAAGTGTAA...TAATGTTTGATA/TAATGTTTGATA...TGTAG|GAC 0 1 70.914
77225588 GT-AG 0 1.000000099473604e-05 359 rna-XM_021043403.2 14452920 8 941977 942335 Exaiptasia diaphana 2652724 ACG|GTATGGCAGA...ATAATGTTATTG/CGCTGTCTAACA...TGTAG|GAG 1 1 78.209
77225589 GT-AG 0 1.000000099473604e-05 1181 rna-XM_021043403.2 14452920 9 942440 943620 Exaiptasia diaphana 2652724 TGG|GTAAGAGTAA...TGTTACTTATCA/TTGTTACTTATC...ATTAG|GTT 0 1 87.812

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);