introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 14452916

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
77225566 GT-AG 0 0.0543536526262348 68 rna-XM_021042341.2 14452916 2 1282825 1282892 Exaiptasia diaphana 2652724 CAG|GTATTCTACC...CACTCATTAACT/CTATAATTCACT...TACAG|ACA 1 1 65.143
77225567 GT-AG 0 1.000000099473604e-05 388 rna-XM_021042341.2 14452916 3 1283111 1283498 Exaiptasia diaphana 2652724 TTC|GTGAGTATCC...AAGGCCTTAAAA/TAAAAACTAAAT...TTCAG|GTT 0 1 72.471
77225568 GT-AG 0 1.000000099473604e-05 73 rna-XM_021042341.2 14452916 4 1283623 1283695 Exaiptasia diaphana 2652724 TAG|GTAGGTGGCG...CAATTGTTAACA/ACAATGTTCATT...TCTAG|GGT 1 1 76.639
77225569 GT-AG 0 0.0001740034288875 394 rna-XM_021042341.2 14452916 5 1283849 1284242 Exaiptasia diaphana 2652724 GAG|GTATAAACCA...CTACCTTTGATT/TCCTATTTCACA...TTCAG|GTG 1 1 81.782
77225570 GT-AG 0 0.0001383926343069 568 rna-XM_021042341.2 14452916 6 1284487 1285054 Exaiptasia diaphana 2652724 AAG|GTAAATTCTT...AGATCTTTAGCA/AAATGTTTCATA...TCCAG|ATA 2 1 89.983
77225829 GT-AG 0 0.0002437394821644 845 rna-XM_021042341.2 14452916 1 1281852 1282696 Exaiptasia diaphana 2652724 ACA|GTAAGTACGC...TATTTCTTAATT/TTTTTGTTAATT...TGCAG|TGA   0 61.378

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);