WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 14452912

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
77225538	GT-AG	6.568473258779491e-05	1918	rna-XM_021062043.2 14452912	1	1205661	1207578	Exaiptasia diaphana 2652724	ATT\|GTAAGTATTG...AGTCGCTTAAAT/CTTAAATTTATA...TGCAG\|AGG	2	1	4.531
77225539	GT-AG	1.000000099473604e-05	485	rna-XM_021062043.2 14452912	2	1205103	1205587	Exaiptasia diaphana 2652724	GAT\|GTAAGTAGAC...TCTATTTTCTCT/TTAAAGCTAATA...TACAG\|GCA	0	1	10.437
77225540	GT-AG	3.626532103063083e-05	759	rna-XM_021062043.2 14452912	3	1204119	1204877	Exaiptasia diaphana 2652724	AGT\|GTAAGTACTA...TATTCATTGATA/AAAGTATTCATT...TGCAG\|ATC	0	1	28.641
77225541	GT-AG	2.553333094095608e-05	706	rna-XM_021062043.2 14452912	4	1203311	1204016	Exaiptasia diaphana 2652724	AAG\|GTAAATTCTA...CCGTTTTTACCT/TTCTTTTTAAGC...CATAG\|TTG	0	1	36.893
77225542	GT-AG	1.000000099473604e-05	546	rna-XM_021062043.2 14452912	5	1202666	1203211	Exaiptasia diaphana 2652724	CAG\|GTCAGTATAC...GACTCTATATCA/CAATGTTTCATT...TCCAG\|ATT	0	1	44.903
77225543	GT-AG	4.7079474057235e-05	1726	rna-XM_021062043.2 14452912	6	1200826	1202551	Exaiptasia diaphana 2652724	AAT\|GTAAGTTGTA...TCATTCTTCATT/TCATTCTTCATT...TAAAG\|GGA	0	1	54.126
77225544	GT-AG	1.000000099473604e-05	530	rna-XM_021062043.2 14452912	7	1200205	1200734	Exaiptasia diaphana 2652724	GAG\|GTACAAGTGC...TAATTTTCAAAT/TGAGTATTCATA...CGTAG\|GAG	1	1	61.489
77225545	GT-AG	1.000000099473604e-05	551	rna-XM_021062043.2 14452912	8	1199448	1199998	Exaiptasia diaphana 2652724	ATG\|GTAAAGGGAC...TTTTTTTTAATA/TTTTTTTTAATA...TGTAG\|AAG	0	1	78.155
77225546	GT-AG	0.0004302702281599	595	rna-XM_021062043.2 14452912	9	1198765	1199359	Exaiptasia diaphana 2652724	TTT\|GTAAGTTGTC...AAACTTTTATTT/AAAACTTTTATT...TGCAG\|ACG	1	1	85.275

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);