introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 14452911

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
77225529 GT-AG 0 1.000000099473604e-05 352 rna-XM_021058849.2 14452911 1 1154506 1154857 Exaiptasia diaphana 2652724 AGG|GTAAGTTACA...GGTTTCTGATAA/AACTTGTTCATT...GACAG|GGA 2 1 4.968
77225530 GT-AG 0 1.000000099473604e-05 230 rna-XM_021058849.2 14452911 2 1154940 1155169 Exaiptasia diaphana 2652724 ATG|GTGACAAAAT...TTTTCTTTTATA/TTTTCTTTTATA...TCAAG|ATT 0 1 11.538
77225531 GT-AG 0 3.326914927934149e-05 586 rna-XM_021058849.2 14452911 3 1155386 1155971 Exaiptasia diaphana 2652724 GAG|GTAGTTAGAT...ATTTTTTTAATT/ATTTTTTTAATT...CAAAG|ATA 0 1 28.846
77225532 GT-AG 0 1.000000099473604e-05 618 rna-XM_021058849.2 14452911 4 1156080 1156697 Exaiptasia diaphana 2652724 ATG|GTAATGCTTA...TTTTTCTATATT/TTTTTCTATATT...TTAAG|ATT 0 1 37.5
77225533 GT-AG 0 1.2330493225868477e-05 252 rna-XM_021058849.2 14452911 5 1156803 1157054 Exaiptasia diaphana 2652724 CAG|GTATGGACAC...TGCGTTTTAATT/TGCGTTTTAATT...TTCAG|TTG 0 1 45.913
77225534 GT-AG 0 1.000000099473604e-05 272 rna-XM_021058849.2 14452911 6 1157166 1157437 Exaiptasia diaphana 2652724 AGG|GTAAGGATGT...GGAACCTTGAAG/AAGACTATCATG...TTTAG|TAT 0 1 54.808
77225535 GT-AG 0 1.000000099473604e-05 224 rna-XM_021058849.2 14452911 7 1157529 1157752 Exaiptasia diaphana 2652724 GAG|GTGAGTCACT...ATTCTCATAAAA/ATCATTCTCATA...GTTAG|AGC 1 1 62.099
77225536 GT-AG 0 2.4341071887698732e-05 741 rna-XM_021058849.2 14452911 8 1157956 1158696 Exaiptasia diaphana 2652724 CTG|GTAAGTTACG...TTGTTTTTATTA/GTTGTTTTTATT...ATCAG|ATG 0 1 78.365
77225537 GT-AG 0 5.861158481055703e-05 961 rna-XM_021058849.2 14452911 9 1158785 1159745 Exaiptasia diaphana 2652724 TCT|GTAAGTATTG...ATTTGCATGATC/ATTTGCATGATC...TATAG|ATA 1 1 85.417

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);