introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 14452906

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Suggested facets: score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
77225503 GT-AG 0 1.000000099473604e-05 575 rna-XM_021049077.2 14452906 2 811303 811877 Exaiptasia diaphana 2652724 TCG|GTGAGTTCAT...GTCATTGTAATC/AGTATTGTCATT...TTCAG|AAT 0 1 25.821
77225504 GT-AG 0 1.000000099473604e-05 307 rna-XM_021049077.2 14452906 3 810953 811259 Exaiptasia diaphana 2652724 ATG|GTAGGTATAT...TTCATATTATCT/CTCGTTTTCACC...TCTAG|CTC 1 1 28.957
77225505 GT-AG 0 4.3800666427453465e-05 99 rna-XM_021049077.2 14452906 4 810689 810787 Exaiptasia diaphana 2652724 TTC|GTAAGTAGAA...ACTTTTTTAATG/ACTTTTTTAATG...TACAG|CCA 1 1 40.992
77225506 GT-AG 0 1.000000099473604e-05 572 rna-XM_021049077.2 14452906 5 810062 810633 Exaiptasia diaphana 2652724 AAG|GTAAGATGCC...TATATTTTATTC/ATATATTTTATT...ACTAG|CGT 2 1 45.004
77225507 GT-AG 0 1.1974356641240348e-05 857 rna-XM_021049077.2 14452906 6 808926 809782 Exaiptasia diaphana 2652724 AAA|GTAAGTATTA...TATTTCATAGAT/AGGTATTTCATA...TTTAG|TGT 2 1 65.354
77225508 GT-AG 0 0.0013004614945441 484 rna-XM_021049077.2 14452906 7 808191 808674 Exaiptasia diaphana 2652724 CAG|GTAACTTTAA...AAGTTTTTTTTT/AGTCTAGTGACA...TGTAG|ATG 1 1 83.662
77225819 GT-AG 0 1.000000099473604e-05 1556 rna-XM_021049077.2 14452906 1 812234 813789 Exaiptasia diaphana 2652724 GAG|GTAGGTCGCG...TCTTCCTTTTTT/GAGCTATTCACA...CAAAG|GCA   0 3.063

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);