introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 14452904

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
77225485 GT-AG 0 1.000000099473604e-05 808 rna-XM_021037555.2 14452904 1 1241929 1242736 Exaiptasia diaphana 2652724 GTT|GTGAGTAACT...ATGGCCTTGAAT/TTGAATTTCATT...TACAG|ATC 0 1 11.111
77225486 GT-AG 0 1.000000099473604e-05 400 rna-XM_021037555.2 14452904 3 1243465 1243864 Exaiptasia diaphana 2652724 ATG|GTGAGAGTTA...GCTTTTTTCATT/GCTTTTTTCATT...TGTAG|TTC 0 1 24.0
77225487 GT-AG 0 1.000000099473604e-05 708 rna-XM_021037555.2 14452904 4 1243934 1244641 Exaiptasia diaphana 2652724 CAG|GTGGGTAACA...TTTTTTTTATGT/ATTTTTTTTATG...TTTAG|TCA 0 1 29.111
77225488 GT-AG 0 1.000000099473604e-05 157 rna-XM_021037555.2 14452904 5 1244768 1244924 Exaiptasia diaphana 2652724 GCT|GTGAGTGTTT...CTATTTTTGATA/GGATTTTTCACT...CATAG|GTT 0 1 38.444
77225489 GT-AG 0 0.0085253451847527 331 rna-XM_021037555.2 14452904 6 1244991 1245321 Exaiptasia diaphana 2652724 GTC|GTATGTACTT...TTGTTTTTAAGT/TTGTTTTTAAGT...TTTAG|GGT 0 1 43.333
77225490 GT-AG 0 1.000000099473604e-05 152 rna-XM_021037555.2 14452904 7 1245395 1245546 Exaiptasia diaphana 2652724 AAG|GTAATTATCC...CTTTTCTTGTTT/TTCTTGTTTATT...ATTAG|AAA 1 1 48.741
77225491 GT-AG 0 1.9215173758424988e-05 402 rna-XM_021037555.2 14452904 8 1245629 1246030 Exaiptasia diaphana 2652724 GAA|GTAGGTCGCT...CTAACCTTGAAC/ATTCAATTTATT...TTTAG|GAT 2 1 54.815
77225492 GT-AG 0 0.0019255310161022 1207 rna-XM_021037555.2 14452904 10 1246944 1248150 Exaiptasia diaphana 2652724 TAG|GTATGCTACT...AGTGTTTTCATG/ATTAGACTCATA...TGTAG|GTG 2 1 68.593
77225493 GT-AG 0 2.192157200037383e-05 481 rna-XM_021037555.2 14452904 11 1248381 1248861 Exaiptasia diaphana 2652724 ATG|GTATGTCACA...TTAATATCAACT/CTTAATATCAAC...TGTAG|GGT 1 1 85.63

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);