introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 14452892

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
77225415 GT-AG 0 1.000000099473604e-05 1402 rna-XM_021039453.2 14452892 1 840879 842280 Exaiptasia diaphana 2652724 CAG|GTGAGTCATA...TTTATTTTAATT/TTTATTTTTATT...TGCAG|CAT 0 1 30.228
77225416 GT-AG 0 2.4483937565685285e-05 170 rna-XM_021039453.2 14452892 2 842389 842558 Exaiptasia diaphana 2652724 GCT|GTAAGTATAA...ATAACTATGACA/CAACAGTTTATT...TTCAG|GCA 0 1 37.072
77225417 GT-AG 0 1.000000099473604e-05 678 rna-XM_021039453.2 14452892 3 842631 843308 Exaiptasia diaphana 2652724 CAG|GTACGTGCTA...TTTCCCCTAATC/TTTCCCCTAATC...TGCAG|GTG 0 1 41.635
77225418 GT-AG 0 1.000000099473604e-05 783 rna-XM_021039453.2 14452892 4 843601 844383 Exaiptasia diaphana 2652724 TAG|GTAAGGATGA...ATCCACTTATTT/TATCCACTTATT...TTCAG|GTA 1 1 60.139
77225419 GT-AG 0 1.000000099473604e-05 912 rna-XM_021039453.2 14452892 5 844535 845446 Exaiptasia diaphana 2652724 CAG|GTAAATTATT...ACGGCATTGCTG/TATCACGGCATT...TTTAG|TCC 2 1 69.708
77225420 GT-AG 0 1.000000099473604e-05 167 rna-XM_021039453.2 14452892 6 845461 845627 Exaiptasia diaphana 2652724 ATG|GTAATATGCG...ATCTTTTTATTA/TATCTTTTTATT...TTCAG|GTG 1 1 70.596
77225421 GT-AG 0 5.397525195775989e-05 210 rna-XM_021039453.2 14452892 7 845757 845966 Exaiptasia diaphana 2652724 CAG|GTAAGTTTTC...TCTTTTTTAAAT/TCTTTTTTAAAT...TCCAG|GAA 1 1 78.771
77225422 GT-AG 0 2.1372203411721245e-05 303 rna-XM_021039453.2 14452892 8 846116 846418 Exaiptasia diaphana 2652724 CAG|GTACGTTAAT...TGGACGTTGATA/ACGTTGATAATC...ACTAG|GTA 0 1 88.213

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);