introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 14452891

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id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
77225409 GT-AG 0 1.000000099473604e-05 299 rna-XM_021038203.2 14452891 2 1809207 1809505 Exaiptasia diaphana 2652724 CGG|GTAGGTATAA...AACTTCTTCACT/AACTTCTTCACT...TGTAG|GTT 1 1 22.998
77225410 GT-AG 0 1.000000099473604e-05 1046 rna-XM_021038203.2 14452891 3 1809733 1810778 Exaiptasia diaphana 2652724 AAG|GTACAGTTAG...GTAGTTTTCTTT/AAGTGGTTGATA...TCTAG|TGG 0 1 35.984
77225411 GT-AG 0 1.000000099473604e-05 67 rna-XM_021038203.2 14452891 4 1810894 1810960 Exaiptasia diaphana 2652724 CAT|GTGAGTTAAA...TAACCCTTCACT/TTAAATCTGATT...AATAG|GTT 1 1 42.563
77225412 GT-AG 0 4.461980034633986e-05 186 rna-XM_021038203.2 14452891 5 1811259 1811444 Exaiptasia diaphana 2652724 AAA|GTAAGTATGT...ATTTTTTTATTT/CATTTTTTTATT...CTTAG|ATT 2 1 59.611
77225413 GT-AG 0 2.0137628434371023e-05 221 rna-XM_021038203.2 14452891 6 1811471 1811691 Exaiptasia diaphana 2652724 GTG|GTACGTAGAT...TTATCTTTAAGT/TTTTATGTCATT...TGCAG|CAA 1 1 61.098
77225414 GT-AG 0 0.8642290899574632 100 rna-XM_021038203.2 14452891 7 1811842 1811941 Exaiptasia diaphana 2652724 AAG|GTATCCACGT...GTTTTCTAAGTT/AATGTGCTTATT...TGTAG|ATG 1 1 69.68
77225817 GT-AG 0 0.0049920364313379 1017 rna-XM_021038203.2 14452891 1 1807574 1808590 Exaiptasia diaphana 2652724 AAG|GTATGTTTAA...TTTTCTATAATT/ATGAATTTTATA...TGCAG|AAT   0 7.666

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);