WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 14424071

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
77102095	GT-AG	0.0009203148486304	320	rna-XM_006414366.2 14424071	1	11185538	11185857	Eutrema salsugineum 72664	GAG\|GTATGTCTTC...TTTTCTCTGATA/TTTTCTCTGATA...TGTAG\|GCC	0	1	37.234
77102096	GT-AG	8.112446729680457e-05	139	rna-XM_006414366.2 14424071	2	11184882	11185020	Eutrema salsugineum 72664	AAG\|GTTTGCCAGT...TATTTCTGAACG/GTGTTTCTGATA...AACAG\|ATG	1	1	50.329
77102097	GT-AG	0.0002319911952208	233	rna-XM_006414366.2 14424071	3	11184473	11184705	Eutrema salsugineum 72664	GAG\|GTAATCATTG...ATGATCTTAGTC/ATCTGTCTCATG...GACAG\|GTC	0	1	54.787
77102098	GT-AG	0.0001039779268462	180	rna-XM_006414366.2 14424071	4	11183801	11183980	Eutrema salsugineum 72664	CAG\|GTCTGTTGTT...GATGCCTTACTC/TGATGCCTTACT...TGCAG\|GAG	0	1	67.249
77102099	GT-AG	1.000000099473604e-05	104	rna-XM_006414366.2 14424071	5	11183605	11183708	Eutrema salsugineum 72664	GTG\|GTAAATCATT...TAACTGTTATAT/ACATTGTTTACG...GATAG\|TTA	2	1	69.58
77102100	GT-AG	6.718352120733746e-05	87	rna-XM_006414366.2 14424071	6	11183430	11183516	Eutrema salsugineum 72664	CAG\|GTATTAATAT...GATATCTAAGCT/TGATATCTAAGC...TTCAG\|AGA	0	1	71.809
77102101	GT-AG	1.5970329899969062e-05	120	rna-XM_006414366.2 14424071	7	11183195	11183314	Eutrema salsugineum 72664	AAG\|GTATGAACTC...AGGATTTTGATT/AGGATTTTGATT...TATAG\|TGA	1	1	74.721
77102102	GT-AG	0.0003067049371617	121	rna-XM_006414366.2 14424071	8	11182941	11183061	Eutrema salsugineum 72664	CAG\|GTACTCGTGT...GATATTTTAGTG/ATTTTAGTGATT...TACAG\|AGG	2	1	78.09
77102103	GT-AG	1.3474234722755382e-05	88	rna-XM_006414366.2 14424071	9	11182678	11182765	Eutrema salsugineum 72664	CAG\|GTAATTTCCA...GAGTTCTTACTC/TGAGTTCTTACT...TGTAG\|GAT	0	1	82.523

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);