WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 13851126

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
73763483	GT-AG	1.000000099473604e-05	818	rna-XM_012977278.1 13851126	1	3812560	3813377	Erythranthe guttata 4155	CAG\|GTCGATATTT...CTAGTCATGATG/ATGCTTCTCATG...ATCAG\|GTA	0	1	5.941
73763484	GT-AG	3.197096067511168e-05	256	rna-XM_012977278.1 13851126	2	3813843	3814098	Erythranthe guttata 4155	CAA\|GTAAGTATTC...ATTGGCTTATTA/AATTGGCTTATT...GGCAG\|ATT	0	1	22.992
73763485	GT-AG	1.4807546794224096e-05	112	rna-XM_012977278.1 13851126	3	3814516	3814627	Erythranthe guttata 4155	GTG\|GTAAGTCTAA...CACCTCTTATCA/AGAGTTCTAAAC...TGCAG\|ATT	0	1	38.284
73763486	GT-AG	0.0001263941638499	106	rna-XM_012977278.1 13851126	4	3814868	3814973	Erythranthe guttata 4155	GCC\|GTAAGTATCT...AGTTTCTTGCCC/GAAAGTTTCATA...ATCAG\|GTC	0	1	47.085
73763487	GT-AG	2.425765965889397e-05	90	rna-XM_012977278.1 13851126	5	3815790	3815879	Erythranthe guttata 4155	AAG\|GTAGTATCTC...GTTTTCTTAGAA/CGTTTTCTTAGA...TGCAG\|ATG	0	1	77.008
73763488	GT-AG	1.000000099473604e-05	845	rna-XM_012977278.1 13851126	6	3816038	3816882	Erythranthe guttata 4155	CCG\|GTGAATACCT...TGTGCCTTGTTA/TGTCTTCCCATT...CGCAG\|ATC	2	1	82.802
73763489	GT-AG	0.0005842554098402	131	rna-XM_012977278.1 13851126	7	3816996	3817126	Erythranthe guttata 4155	GAG\|GTAACATATA...GTTTTCTTCACT/GTTTTCTTCACT...ATCAG\|GAT	1	1	86.945
73763490	GT-AG	1.000000099473604e-05	91	rna-XM_012977278.1 13851126	8	3817478	3817568	Erythranthe guttata 4155	AAG\|GTCGGTAGTT...AAGCCTTTGAAA/CATTCGTTTATT...AACAG\|GTT	1	1	99.817

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);