introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 13851121

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Suggested facets: dinucleotide_pair, score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
73763427 GT-AG 0 4.319476309464138e-05 214 rna-XM_012974505.1 13851121 1 2285689 2285902 Erythranthe guttata 4155 CTA|GTAAGTATAC...TTCTTCTAAACA/TTTCTTCTAAAC...TCAAG|AAT 1 1 14.646
73763428 GT-AG 0 1.000000099473604e-05 648 rna-XM_012974505.1 13851121 2 2286184 2286831 Erythranthe guttata 4155 AAG|GTTAGCATAA...TGTCTGTTAATC/TGTCTGTTAATC...TGCAG|TCA 0 1 24.784
73763429 GT-AG 0 1.000000099473604e-05 94 rna-XM_012974505.1 13851121 3 2287070 2287163 Erythranthe guttata 4155 AAG|GTAAGAGACG...TTTTTTTTCATG/TTTTTTTTCATG...GGCAG|ATC 1 1 33.369
73763430 GT-AG 0 0.019426573754634 101 rna-XM_012974505.1 13851121 4 2287485 2287585 Erythranthe guttata 4155 ACA|GTATAATTTC...TGCTTCTTGTTG/CATGCATTGAAC...TCCAG|GAG 1 1 44.949
73763431 GT-AG 0 0.0018664113675544 281 rna-XM_012974505.1 13851121 5 2287672 2287952 Erythranthe guttata 4155 ACG|GTATTATCTC...TACTTCTAAATA/ATACTTCTAAAT...CTCAG|GAA 0 1 48.052
73763432 GC-AG 0 1.000000099473604e-05 72 rna-XM_012974505.1 13851121 6 2288064 2288135 Erythranthe guttata 4155 GAG|GCGAGAACTG...CTCTTCTTATCC/ACTCTTCTTATC...TGCAG|GCA 0 1 52.056
73763433 GT-AG 0 1.000000099473604e-05 276 rna-XM_012974505.1 13851121 7 2288438 2288713 Erythranthe guttata 4155 CTG|GTAATTATCC...AACCCCATAATG/AATGTACTTATA...TGCAG|GTT 2 1 62.951
73763434 GT-AG 0 1.000000099473604e-05 72 rna-XM_012974505.1 13851121 8 2288981 2289052 Erythranthe guttata 4155 CAG|GTAAACCAAT...ATATTCTTTTTA/ATTCTTTTTAAT...ACCAG|GGG 2 1 72.583

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);