WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 13851115

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
73763363	GT-AG	1.716777955874995e-05	508	rna-XM_012992135.1 13851115	1	1246994	1247501	Erythranthe guttata 4155	CAG\|GTAATTTCTT...TCTTTCTTCTTT/TTTGATATAACA...AACAG\|TCC	2	1	19.902
73763364	GT-AG	1.5863726351128445e-05	97	rna-XM_012992135.1 13851115	2	1249165	1249261	Erythranthe guttata 4155	ACC\|GTAAGTGCTA...TTTTCTTGGATT/TTGTCGCTCACT...TGCAG\|AAT	0	1	78.376
73763365	GT-AG	0.0045678288102472	99	rna-XM_012992135.1 13851115	3	1249407	1249505	Erythranthe guttata 4155	ATG\|GTATATCATC...CTGCTCTTGAAA/GTCTTGCTGACT...CAAAG\|TTG	1	1	83.474
73763366	GT-AG	0.0001926682788566	153	rna-XM_012992135.1 13851115	4	1249604	1249756	Erythranthe guttata 4155	GCG\|GTGTGTATTT...TCTTCTTTATTA/ATCTTCTTTATT...CCCAG\|GCC	0	1	86.92
73763367	GT-AG	0.0010795711321066	342	rna-XM_012992135.1 13851115	5	1249823	1250164	Erythranthe guttata 4155	CAT\|GTAAGTTTTT...CTGACCTTATTG/TCTGACCTTATT...TGCAG\|AGG	0	1	89.241
73763368	GT-AG	0.0006533871736723	212	rna-XM_012992135.1 13851115	6	1250255	1250466	Erythranthe guttata 4155	TAT\|GTACGCCCTG...CTAACTTGAGTT/AAATTGCTAACT...TACAG\|GTG	0	1	92.405
73763369	GT-AG	0.0389051164336447	241	rna-XM_012992135.1 13851115	7	1250644	1250884	Erythranthe guttata 4155	AAG\|GTATCGTACA...TGGACTTTATAT/TCTCTGTTAATT...AATAG\|GAA	0	1	98.629

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);