introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 13851076

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
73762947 GT-AG 0 1.460073240107723e-05 85 rna-XM_012979985.1 13851076 1 1390412 1390496 Erythranthe guttata 4155 CAG|GTTTGTTACG...ATTTTCATATTA/TTGTAATTTACT...TGCAG|GTG 1 1 41.44
73762948 GT-AG 0 2.7796327305732555e-05 96 rna-XM_012979985.1 13851076 2 1390056 1390151 Erythranthe guttata 4155 GTG|GTAATTATCA...ATAATCTTGAAC/TTTTTTTTCAAT...TCTAG|GTT 0 1 48.174
73762949 GT-AG 0 0.006438036804668 130 rna-XM_012979985.1 13851076 3 1389716 1389845 Erythranthe guttata 4155 GAG|GTTCCCCCTA...TGATTCTGAATT/ACTTATTTGATT...TGCAG|ATA 0 1 53.613
73762950 GT-AG 0 6.977199622287429e-05 82 rna-XM_012979985.1 13851076 4 1389415 1389496 Erythranthe guttata 4155 CCC|GTAAGTACGA...TTTTTTTTAGTT/TTTTTAGTTATT...TCCAG|GTC 0 1 59.285
73762951 GT-AG 0 0.0001424802877017 89 rna-XM_012979985.1 13851076 5 1388360 1388448 Erythranthe guttata 4155 CAG|GTTTATACTT...TTTTTTTTAATG/TTTTTTTTAATG...TGCAG|GCA 0 1 84.305
73762952 GT-AG 0 1.000000099473604e-05 235 rna-XM_012979985.1 13851076 6 1388029 1388263 Erythranthe guttata 4155 GAG|GTAAATATTT...ATATACTAATTT/TATATACTAATT...TGCAG|GTG 0 1 86.791
73762953 GT-AG 0 1.000000099473604e-05 84 rna-XM_012979985.1 13851076 7 1387846 1387929 Erythranthe guttata 4155 CAG|GTTCAATACT...TATTTTTTAACT/TATTTTTTAACT...TGCAG|ATT 0 1 89.355
73762954 GT-AG 0 0.0054435789807607 97 rna-XM_012979985.1 13851076 8 1387559 1387655 Erythranthe guttata 4155 AGG|GTATTTTGGT...ATTTATTTATCT/AATTTATTTATC...TGCAG|CTT 1 1 94.276

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);