introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 13705602

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
72997641 GT-AG 0 1.000000099473604e-05 16795 rna-XM_007524288.2 13705602 1 895271 912065 Erinaceus europaeus 9365 CAG|GTGCGCGGGC...CGGTCCTCACTT/CCGGTCCTCACT...CGCAG|CTG 0 1 4.31
72997642 GT-AG 0 1.000000099473604e-05 3537 rna-XM_007524288.2 13705602 2 891665 895201 Erinaceus europaeus 9365 AAG|GTAAGGACGC...CTATTTTTTCCC/GTGCCACTGATC...CCAAG|AAA 0 1 10.92
72997643 GT-AG 0 0.0016279244485547 1131 rna-XM_007524288.2 13705602 3 890461 891591 Erinaceus europaeus 9365 CAG|GTACCGTTGG...GGTCCCCCAGCT/GCAGGAGTCACA...TTAAG|CCT 1 1 17.912
72997644 GT-AG 0 1.000000099473604e-05 1675 rna-XM_007524288.2 13705602 4 888642 890316 Erinaceus europaeus 9365 TCG|GTGAGCGCAG...CTGTCCTGGTTC/GCTCTGCTGAGT...CCAAG|GCG 1 1 31.705
72997645 GT-AG 0 1.000000099473604e-05 755 rna-XM_007524288.2 13705602 5 887753 888507 Erinaceus europaeus 9365 GGG|GTGAGTCCCC...GAGCTCTGAGGC/CGAGCTCTGAGG...TCCAG|CAC 0 1 44.54
72997646 GT-AG 0 1.000000099473604e-05 1413 rna-XM_007524288.2 13705602 6 886181 887593 Erinaceus europaeus 9365 GAC|GTGAGTATTT...CCGTCTGTTTCT/GGTAGAGTGACC...CGCAG|GTG 0 1 59.77
72997647 GT-AG 0 1.000000099473604e-05 1130 rna-XM_007524288.2 13705602 7 884947 886076 Erinaceus europaeus 9365 GCG|GTGAGCCCCC...ACCTCCTCAAAC/CACCTCCTCAAA...TCCAG|AAT 2 1 69.732
72997648 GT-AG 0 1.000000099473604e-05 11082 rna-XM_007524288.2 13705602 8 873755 884836 Erinaceus europaeus 9365 CAG|GTGAGTCCCG...AGTCTCTTGTCT/TCTTGTCTCACC...AGCAG|GGA 1 1 80.268

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);